Browse Element(s) Details


OsAffx.5223.1.S1_at

Description tigr:9635.m00504
TID=OsAffx.5223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0566010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05630OsAffx.16101.1.S1_at11/117+2676798..2677514Glutaredoxin-like family protein, expressed
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5223.1.S1_at--600--1811NONE
ACGCCACCCAGGGAGTTGGCAGGAC
NONE
OsAffx.5223.1.S1_at--758--10811Chr07:2695540..2695564 (25 bp)
TTGGCAGGACCGGAACCACAGGGAT
LOC_Os07g05660
OsAffx.5223.1.S1_at--439--7991Chr07:2695546..2695570 (25 bp)
GGACCGGAACCACAGGGATCACATC
LOC_Os07g05660
OsAffx.5223.1.S1_at--950--7951Chr07:2695561..2695585 (25 bp)
GGATCACATCCTCCTTGAAGGCTGG
LOC_Os07g05660
OsAffx.5223.1.S1_at--846--2091Chr07:2695566..2695590 (25 bp)
ACATCCTCCTTGAAGGCTGGGAAGA
LOC_Os07g05660
OsAffx.5223.1.S1_at--450--4051Chr07:2695595..2695619 (25 bp)
CGATGAGGAAATACGGCTGCTACTT
LOC_Os07g05660
OsAffx.5223.1.S1_at--840--5331Chr07:2695623..2695647 (25 bp)
GAAGTAGCTAAGCTTGAAGTTGCAA
LOC_Os07g05660
OsAffx.5223.1.S1_at--641--10491Chr07:2695636..2695833 (25 bp)
TTGAAGTTGCAAGCCGGAGAATGGA
LOC_Os07g05660
OsAffx.5223.1.S1_at--1110--951Chr07:2695833..2695857 (25 bp)
AGGAGACAATAAGGAACAGCAGGTT
LOC_Os07g05660
OsAffx.5223.1.S1_at--767--8191Chr07:2695941..2695965 (25 bp)
GGAAGGTCCTCAGGGAGTATATTGC
LOC_Os07g05660
OsAffx.5223.1.S1_at--287--6891Chr07:2695957..2695981 (25 bp)
GTATATTGCTGGCTTGGAGATCCAA
LOC_Os07g05660
Target Sequence 
ACGCCACCCAGGGAGTTGGCAGGACCGGAACCACAGGGATCACATCCTCCTTGAAGGCTGGGAAGAATGTCGATGAGGAA
ATACGGCTGCTACTTGTAGAAGTAGCTAAGCTTGAAGTTGCAAGCCGGAGAATGGAGGAGACAATAAGGAACAGCAGGTT
CCACAGAAGGAAGGTCCTCAGGGAGTATATTGCTGGCTTGGAGATCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis