Browse Element(s) Details


OsAffx.5273.1.S1_at

Description tigr:9635.m00946
TID=OsAffx.5273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g098144/11F-box domain containing protein, expressed
LOC_Os06g414101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5273.1.S1_at--581--5771Chr07:5223618..5223642 (25 bp)
GACGAGAGCAACTGTACGAGCACCG
LOC_Os07g09814
OsAffx.5273.1.S1_at--773--4071Chr07:5223620..5223644 (25 bp)
CGAGAGCAACTGTACGAGCACCGTA
LOC_Os07g09814
OsAffx.5273.1.S1_at--364--5951Chr07:5223623..5223644 (22 bp)
GAGCAACTGTACGAGCACCGTAGAC
LOC_Os07g09814
OsAffx.5273.1.S1_at--442--5151Chr07:5223625..5223644 (20 bp)
GCAACTGTACGAGCACCGTAGACCA
LOC_Os07g09814
OsAffx.5273.1.S1_at--833--2531NONE
AACTGTACGAGCACCGTAGACCATT
NONE
OsAffx.5273.1.S1_at--325--8751NONE
TGTACGAGCACCGTAGACCATTGCG
NONE
OsAffx.5273.1.S1_at--1100--9931NONE
TACGAGCACCGTAGACCATTGCGCC
NONE
OsAffx.5273.1.S1_at--447--6412Chr07:5224907..5225098 (25 bp)
GATCTGTATGCATGGATGCAGTTTG
NONE
OsAffx.5273.1.S1_at--276--6851Chr07:5225094..5225118 (25 bp)
GTTTGAATTACAGAACCTGCAGGAT
NONE
OsAffx.5273.1.S1_at--83--2631Chr07:5225107..5225131 (25 bp)
AACCTGCAGGATCTGGTATTCCAAG
NONE
OsAffx.5273.1.S1_at--128--1771Chr07:5225108..5225132 (25 bp)
ACCTGCAGGATCTGGTATTCCAAGA
NONE
Target Sequence 
GACGAGAGCAACTGTACGAGCACCGTAGACCATTGCGCCTCTTGTATTCTCCAAAGACAAAGATGTTGCTGCTTTCGCTT
GCTGAGGCTACTTGAGCTACTTCGTCTCTTAATTTGCTCCCCAGATGGAGCAAATGATGCTATCTCATTCAGTTACAATA
ATGAAATACTCCTATATCAGATACCTGTTTGTATTCCGACGGTACAAGCTGATGTTATCAGCCTGGTTTACCGTCTTTTT
AAAATGTCGACAAACCTGTGGTGGTGTGATCTGTATGCATGGATGCAGTTTGAATTACAGAACCTGCAGGATCTGGTATT
CCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis