Browse Element(s) Details


OsAffx.535.1.S1_at

Description gb:XM_354123.1
DB_XREF= gi:35189679
GEN=OJ1664_D08.21
TID=OsAffx.535.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g216201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g190201/11hypothetical protein
LOC_Os11g264101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21580NANA2+12815510..12817126expressed protein
LOC_Os02g21590OsAffx.32056.1.S1_x_at6/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21590OsAffx.32056.1.S1_at3/112+12820861..12827682transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.2.S1_at4/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.3.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.4.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21600OsAffx.10637.1.S1_s_at3/112+12829400..12833067transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g21610NANA2+12834633..12835142hypothetical protein
LOC_Os02g21620OsAffx.22467.1.S1_x_at4/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.30891.1.S1_x_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.22467.1.S1_at3/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.5.S1_x_at2/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.535.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.31892.1.S1_x_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.7216.1.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21620OsAffx.26611.2.S1_at1/112+12839171..12846285retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g21630Os.52016.1.A1_at11/112+12846467..12851439SEC14 cytosolic factor, putative, expressed
LOC_Os02g21640Os.18455.1.S1_at11/112+12852007..12852957expressed protein
LOC_Os02g21650Os.52450.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21650Os.53107.1.S1_at11/112+12859810..12864032B-cell receptor-associated protein 31-like containing protein, expressed
LOC_Os02g21660Os.8864.1.S1_at11/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed
LOC_Os02g21660Os.11487.1.S1_s_at1/112+12869457..1287246860S ribosomal protein L10a-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.535.1.S1_at--868--1871Chr07:6198366..6198390 (25 bp)
ACGAGGGGGGACTGCCTGCTGCCTG
NONE
OsAffx.535.1.S1_at--557--2633Chr05:15684293..15684317 (25 bp)
AACCTGAGGTGTGGCATCGATTGGT
NONE
OsAffx.535.1.S1_at--589--3532Chr01:15788059..15788080 (22 bp)
CATCGATTGGTCAGAGGGAGTTATA
NONE
OsAffx.535.1.S1_at--968--9373Chr01:15788059..15788082 (24 bp)
TCGATTGGTCAGAGGGAGTTATATG
NONE
OsAffx.535.1.S1_at--545--60714Chr11:12207478..12207836 (25 bp)
GAGTTATATGAAGGGTCTTGCCACA
NONE
OsAffx.535.1.S1_at--111--6791Chr07:6198293..6198317 (25 bp)
GTTATATGAAGGGTCTTGCCACAAT
NONE
OsAffx.535.1.S1_at--998--10412Chr01:16772314..16772333 (20 bp)
TTATATGAAGGGTCTTGCCACAATC
NONE
OsAffx.535.1.S1_at--1109--10171Chr07:6198291..6198315 (25 bp)
TATATGAAGGGTCTTGCCACAATCA
NONE
OsAffx.535.1.S1_at--39--231Chr07:6198290..6198314 (25 bp)
ATATGAAGGGTCTTGCCACAATCAC
NONE
OsAffx.535.1.S1_at--286--10131Chr07:6198289..6198313 (25 bp)
TATGAAGGGTCTTGCCACAATCACT
NONE
OsAffx.535.1.S1_at--569--652Chr01:16772314..16772336 (23 bp)
ATGAAGGGTCTTGCCACAATCACTC
NONE
Target Sequence 
ACGAGGGGGGACTGCCTGCTGCCTGCTGGGGGAGGGGTGAAACCTGAGGTGTGGCATCGATTGGTCAGAGGGAGTTATAT
GAAGGGTCTTGCCACAATCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis