Browse Element(s) Details


OsAffx.5580.1.S1_at

Description tigr:9635.m03964
TID=OsAffx.5580.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g397109/11ETC complex I subunit conserved region family protein, expressed
LOC_Os06g446301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39670NANA7+23773033..23777274retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39680OsAffx.22380.1.S1_at10/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39680OsAffx.22380.1.S1_x_at9/117+23780421..23781235XYPPX repeat family protein, expressed
LOC_Os07g39690Os.7319.1.S1_at10/117+23783263..23789693GCN5-related N-acetyltransferase, putative, expressed
LOC_Os07g39700OsAffx.28826.1.S1_at11/117+23794916..23795947hypothetical protein
LOC_Os07g39710Os.17310.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39710OsAffx.5580.1.S1_at9/117+23796334..23800959ETC complex I subunit conserved region family protein, expressed
LOC_Os07g39720OsAffx.28827.1.S1_at11/117+23805768..23806637expressed protein
LOC_Os07g39730Os.35033.1.S1_x_at11/117+23807169..23810811expressed protein
LOC_Os07g39730Os.47746.1.A1_at11/117+23807169..23810811expressed protein
LOC_Os07g39730OsAffx.9169.1.S1_at1/117+23807169..23810811expressed protein
LOC_Os07g39740Os.34438.1.S1_x_at11/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_x_at9/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.34438.2.A1_at7/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39740Os.38245.2.S1_x_at1/117+23812527..23814764Esterase precursor, putative, expressed
LOC_Os07g39750Os.5789.1.S1_x_at11/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39750Os.34438.1.S1_x_at1/117+23818690..23822434Esterase precursor, putative, expressed
LOC_Os07g39760OsAffx.22377.1.S1_s_at11/117+23823130..23823576hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.2.S1_s_at11/117+23825164..23825608hypothetical protein
LOC_Os07g39770OsAffx.28828.1.S1_at3/117+23825164..23825608hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009631biological_processcold acclimation
GO:0005739cellular_componentmitochondrion
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5580.1.S1_at--26--4231Chr07:23800662..23800686 (25 bp)
CCGCAAGGTGCGGTGCTTCGCTGAC
LOC_Os07g39710
OsAffx.5580.1.S1_at--554--2891Chr07:23800658..23800682 (25 bp)
AAGGTGCGGTGCTTCGCTGACCTTA
LOC_Os07g39710
OsAffx.5580.1.S1_at--21--10651Chr07:23800646..23800670 (25 bp)
TTCGCTGACCTTACCTCTGATTTAT
LOC_Os07g39710
OsAffx.5580.1.S1_at--334--3851Chr07:23800642..23800666 (25 bp)
CTGACCTTACCTCTGATTTATGTAG
LOC_Os07g39710
OsAffx.5580.1.S1_at--33--7551Chr07:23800618..23800642 (25 bp)
GTGGCGATAGATTGGCTAGCCCTCG
LOC_Os07g39710
OsAffx.5580.1.S1_at--820--6491Chr07:23800613..23800637 (25 bp)
GATAGATTGGCTAGCCCTCGCGGAT
LOC_Os07g39710
OsAffx.5580.1.S1_at--1044--1651Chr07:23800601..23800625 (25 bp)
AGCCCTCGCGGATCCGTGTGGGAAT
LOC_Os07g39710
OsAffx.5580.1.S1_at--563--4073Chr12:2856757..2856958 (25 bp)
CGAGATGTCCAGAACTTGGGAGGAA
NONE
OsAffx.5580.1.S1_at--608--931Chr07:23800367..23800390 (24 bp)
AGGAATGTGCTGCTCTCCAGGTTGT
LOC_Os07g39710
OsAffx.5580.1.S1_at--326--8691NONE
TGTGCTGCTCTCCAGGTTGTAATAT
NONE
OsAffx.5580.1.S1_at--397--4771NONE
GCTGCTCTCCAGGTTGTAATATATT
NONE
Target Sequence 
CCGCAAGGTGCGGTGCTTCGCTGACCTTACCTCTGATTTATGTAGTGGCGATAGATTGGCTAGCCCTCGCGGATCCGTGT
GGGAATCGCTCGAGATGTCCAGAACTTGGGAGGAATGTGCTGCTCTCCAGGTTGTAATATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5580.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis