Browse Element(s) Details


OsAffx.5752.1.S1_x_at

Description tigr:9636.m00813
TID=OsAffx.5752.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0860011/11hypothetical protein
LOC_Os08g084006/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g259801/11hypothetical protein
LOC_Os04g289401/11retrotransposon protein, putative, unclassified
LOC_Os04g291201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08570Os.49356.1.S1_at11/118+4940928..4945862expressed protein
LOC_Os08g08580NANA8+4952123..4956032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08586Os.27295.1.S1_at11/118+4960071..4962787expressed protein
LOC_Os08g08586Os.10085.1.S1_at1/118+4960071..4962787expressed protein
LOC_Os08g08592Os.27362.1.S1_at11/118+4964702..4967482expressed protein
LOC_Os08g08592Os.27362.1.S2_at11/118+4964702..4967482expressed protein
LOC_Os08g08592OsAffx.29424.1.S1_at7/118+4964702..4967482expressed protein
LOC_Os08g08600OsAffx.5752.1.S1_x_at11/118+4969829..4972830hypothetical protein
LOC_Os08g08600OsAffx.5752.1.S1_at10/118+4969829..4972830hypothetical protein
LOC_Os08g08610OsAffx.20387.1.S1_x_at1/118+4973788..4976378transposon protein, putative, unclassified
LOC_Os08g08620NANA8+4976632..4978593retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08630NANA8+4981172..4981579hypothetical protein
LOC_Os08g08640OsAffx.442.1.S1_x_at6/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_s_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.442.1.S1_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_x_at4/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.2.S1_x_at3/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_x_at2/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.19066.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.5.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.24587.1.S1_x_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.1.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08640OsAffx.30226.4.S1_at1/118+4984481..4990015transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g08650Os.10531.1.S1_at11/118+4992998..4995791expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5752.1.S1_x_at--997--9571Chr08:4972132..4972156 (25 bp)
TCTTGCATCTGAGGGACCCACGTCG
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--985--471Chr08:4972138..4972162 (25 bp)
ATCTGAGGGACCCACGTCGCTGAAC
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--539--7232Chr08:4972153..4972177 (25 bp)
GTCGCTGAACGATGTGGATGAAATT
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--1007--8552Chr08:4972167..4972191 (25 bp)
TGGATGAAATTTTACCCGCGAGAAT
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--723--8111Chr08:4972194..4972214 (21 bp)
GGACGGCAACGACTTTCTTAGATCT
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--138--9831Chr08:4972371..4972395 (25 bp)
TAAAGTGGCGGAACTCGAGAGAGCT
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--252--7252Chr08:4972482..4972506 (25 bp)
GTCCATGGCCCGAGTTTGTAGAGAG
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--656--10032Chr08:4972500..4972524 (25 bp)
TAGAGAGCTCCGAGTACTCCGCGGA
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--472--8996Chr08:4972608..4972632 (25 bp)
TGAAGCCCTGAAGCAGGAATGCCGT
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--625--8551Chr08:4972650..4972674 (25 bp)
TGGAGGGCATGTGTTGTCTTGCATA
LOC_Os08g08600
OsAffx.5752.1.S1_x_at--1097--6836Chr08:4972704..4972728 (25 bp)
GTTTCTCCATGAAGGGTTCGCTCGT
LOC_Os08g08600
Target Sequence 
TCTTGCATCTGAGGGACCCACGTCGCTGAACGATGTGGATGAAATTTTACCCGCGAGAATGGGGACGGCAACGACTTTCT
TAGATCTCGAGAATGCACTTGCTGACCAAGATCGTCGTATCCAATATTGGAAGACAAAATTTAAAGTGGCGGAACTCGAG
AGAGCTATGTTGGAAGTGAAGAAGGAGCAGGCCGTGGAAACACTCCGAGGTCGTGAGGTGTGGTTCAACTCGTATTTGAA
GAGTTGCTGCACGTCCATGGCCCGAGTTTGTAGAGAGCTCCGAGTACTCCGCGGAGATCCCGAGGAGTCAGCGGCCGGAT
ACATCTCATGGCTGAATGGGGCCTGTACTCAGCTCGAAGGCATCGGCAAGCGCATCGATGAAGCCCTGAAGCAGGAATGC
CGTCGATCGAGCCGATATGCTGGAGGGCATGTGTTGTCTTGCATACGAGATCATCGTCCGCAACTGCACCTCGAGTTTCT
CCATGAAGGGTTCGCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5752.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis