Browse Element(s) Details


OsAffx.6096.1.S1_at

Description tigr:9636.m04124
TID=OsAffx.6096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4073011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40780OsAffx.17443.1.S1_at10/118+25661510..25663932hypothetical protein
LOC_Os08g40790Os.9471.1.S1_a_at11/118+25666295..25671192DNA repair ATPase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6096.1.S1_at--948--5071Chr08:25641070..25641094 (25 bp)
GCACCGGCTAGGGAAGTTCGCATCA
LOC_Os08g40730
OsAffx.6096.1.S1_at--59--7471Chr08:25641108..25641132 (25 bp)
GTGTGCCATCCATAAGACCACCAAG
LOC_Os08g40730
OsAffx.6096.1.S1_at--757--7831Chr08:25641156..25641180 (25 bp)
GGTACAACGCGTCAAGGCCTATGTG
LOC_Os08g40730
OsAffx.6096.1.S1_at--466--8071Chr08:25641202..25641226 (25 bp)
GGAGCACGTATGTTCGCCAATTGGT
LOC_Os08g40730
OsAffx.6096.1.S1_at--528--31Chr08:25641221..25641245 (25 bp)
ATTGGTGTCCAATCCACAACAGTAA
LOC_Os08g40730
OsAffx.6096.1.S1_at--1074--2831Chr08:25641289..25641313 (25 bp)
AAGTACGTTGCACCTCGAGAAGCGC
LOC_Os08g40730
OsAffx.6096.1.S1_at--659--231Chr08:25641360..25641384 (25 bp)
ATATAGCTCCGACTGCTTTGTTGGA
LOC_Os08g40730
OsAffx.6096.1.S1_at--728--8531Chr08:25641381..25641405 (25 bp)
TGGAGCCATTATTTTCGACGAACAG
LOC_Os08g40730
OsAffx.6096.1.S1_at--560--8211Chr08:25641405..25641429 (25 bp)
GGAATCCTACACGTCAGATGGCGAT
LOC_Os08g40730
OsAffx.6096.1.S1_at--976--5711Chr08:25641484..25641508 (25 bp)
GACGGCAAAAACACGGCTTCAACCT
LOC_Os08g40730
OsAffx.6096.1.S1_at--377--6031Chr08:25641544..25641568 (25 bp)
GAGATACTCAACGAGACACCCTTTG
LOC_Os08g40730
Target Sequence 
GCACCGGCTAGGGAAGTTCGCATCAAGGTGACTACTTGGTGTGCCATCCATAAGACCACCAAGCACTCTTTGGAAGACTA
CAAGGCGGTACAACGCGTCAAGGCCTATGTGGAAGAGAACGGACAACAAGAGGGAGCACGTATGTTCGCCAATTGGTGTC
CAATCCACAACAGTAAGGCGCATAGTATCCTGGATTGCAGGGTTTTCCTGAAGGCTGTGAAGTACGTTGCACCTCGAGAA
GCGCCCAGAAGCACTCGGGCCCGACGCGACACGGAGAAGACGGAAGAGGAATATAGCTCCGACTGCTTTGTTGGAGCCAT
TATTTTCGACGAACAGGAATCCTACACGTCAGATGGCGATGACGGTTACTCGGCGTCTGAGTCCGATAACACAAGAGGAG
TCTACGCCATTAATGACGGCAAAAACACGGCTTCAACCTCCGGGACACCCGCACAACACCTCGCGACTATGCGAGAGATA
CTCAACGAGACACCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis