Browse Element(s) Details


OsAffx.6526.1.S1_s_at

Description tigr:9637.m03332
TID=OsAffx.6526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3903411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g38970Os.18044.1.S1_s_at11/119+22376424..22381905DHHC zinc finger domain containing protein, expressed
LOC_Os09g38980Os.27250.1.S1_at11/119+22382445..22386547RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os09g38990NANA9+22387273..22390065hypothetical protein
LOC_Os09g39000OsAffx.18055.1.S1_at11/119+22390829..22392247F-box protein interaction domain containing protein
LOC_Os09g39010NANA9+22396042..22396463NA
LOC_Os09g39020Os.31867.1.S1_at11/119+22399706..22403882expressed protein
LOC_Os09g39034Os.7169.1.S1_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.6526.1.S1_s_at11/119+22404977..22413889expressed protein
LOC_Os09g39034OsAffx.29895.1.S1_at1/119+22404977..22413889expressed protein
LOC_Os09g39050OsAffx.6527.1.S1_at11/119+22418365..22419612F-box domain containing protein, expressed
LOC_Os09g39060Os.26871.1.S1_at11/119+22420417..22422064Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.30196.1.S1_at11/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39070OsAffx.28164.2.S1_at1/119+22427091..22430027Papain family cysteine protease containing protein, expressed
LOC_Os09g39080OsAffx.6528.1.S1_at11/119+22432947..22433195hypothetical protein
LOC_Os09g39090OsAffx.6529.1.S1_at11/119+22435990..22438943Papain family cysteine protease containing protein, expressed
LOC_Os09g39090OsAffx.30202.1.S1_x_at1/119+22435990..22438943Papain family cysteine protease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6526.1.S1_s_at--850--3391Chr09:22413805..22413829 (25 bp)
CAGTACTGCATGCTGCTGCATCCTG
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--1061--9052Chr06:6257166..6257188 (22 bp)
TGCATGCTGCTGCATCCTGCATCCT
NONE
OsAffx.6526.1.S1_s_at--358--10511Chr09:22413752..22413776 (25 bp)
TTCACCGAGGCATCAGCTAGCATTG
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--166--6211Chr09:22413746..22413770 (25 bp)
GAGGCATCAGCTAGCATTGACGGAT
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--852--3391Chr09:22413739..22413763 (25 bp)
CAGCTAGCATTGACGGATGAGCGGC
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--781--8091Chr09:22413706..22413730 (25 bp)
GGAGCCACCGAACACGAAGACGCCG
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--514--1791Chr09:22413672..22413696 (25 bp)
ACCCCGGCGCCATGGTTAGAGGAGA
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--565--6211Chr09:22413625..22413649 (25 bp)
GAGGCTCCGCCCACAGAGAAGAAGA
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--103--5971Chr09:22413610..22413634 (25 bp)
GAGAAGAAGAGCAGACTCCTACCTT
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--944--2771Chr09:22413604..22413628 (25 bp)
AAGAGCAGACTCCTACCTTCTATCT
LOC_Os09g39034
OsAffx.6526.1.S1_s_at--695--551Chr09:22413563..22413587 (25 bp)
ATCCTCATCACGCATCTTCTTGCCA
LOC_Os09g39034
Target Sequence 
CAGTACTGCATGCTGCTGCATCCTGCATCCTCCTCCAATCTTCCTCCGTCCCCTTCACCGAGGCATCAGCTAGCATTGAC
GGATGAGCGGCGCCGTTGGGGAGCCACCGAACACGAAGACGCCGTCGACGAGCACCCCGGCGCCATGGTTAGAGGAGAGG
GGGCAGACAAGGAAGAGGAGGAGGCTCCGCCCACAGAGAAGAAGAGCAGACTCCTACCTTCTATCTCCACCGCTGCGCCT
CCATCCTCATCACGCATCTTCTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6526.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis