Browse Element(s) Details


OsAffx.6794.1.S1_x_at

Description tigr:9638.m02409
TID=OsAffx.6794.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=IQ calmodulin-binding motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2842011/11IQ calmodulin-binding motif family protein, expressed
LOC_Os03g065702/11IQ calmodulin-binding motif family protein, expressed
LOC_Os03g435801/11IQ calmodulin-binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28370OsAffx.30569.1.S1_x_at11/1110+14434249..14435588Chlorophyllase family protein, expressed
LOC_Os10g28380OsAffx.30570.1.S1_at11/1110+14438455..14439908hypothetical protein
LOC_Os10g28380OsAffx.20341.1.S1_x_at1/1110+14438455..14439908hypothetical protein
LOC_Os10g28390OsAffx.8121.1.S1_at11/1110+14443524..14443784hypothetical protein
LOC_Os10g28400OsAffx.20341.1.S1_x_at10/1110+14444352..14446444expressed protein
LOC_Os10g28400OsAffx.20341.1.S1_at9/1110+14444352..14446444expressed protein
LOC_Os10g28410Os.37540.1.S1_x_at11/1110+14447026..14449651expressed protein
LOC_Os10g28410Os.37540.2.S1_at10/1110+14447026..14449651expressed protein
LOC_Os10g28420OsAffx.6794.1.S1_x_at11/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28420OsAffx.25518.1.S1_x_at1/1110+14455720..14457261IQ calmodulin-binding motif family protein, expressed
LOC_Os10g28430OsAffx.6795.1.S1_at11/1110+14460764..14461213hypothetical protein
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6794.1.S1_x_at--55--1191Chr10:14456663..14456687 (25 bp)
AGTACGGCTACTACGCGCAGTGCTC
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--206--6051Chr10:14456857..14456881 (25 bp)
GAGTTCTTCCCCAACTACATGGCCA
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--302--971Chr10:14457019..14457043 (25 bp)
AGGAGCGTCAAGATGCAGCGTTCGT
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--830--2791Chr10:14457028..14457052 (25 bp)
AAGATGCAGCGTTCGTCGTCGCACG
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--858--10611Chr10:14457039..14457063 (25 bp)
TTCGTCGTCGCACGTCGGCGTTCCG
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--7--4371Chr10:14457087..14457111 (25 bp)
CCACCTCTACAGCTACGGGCAGTAT
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--252--2151Chr10:14457095..14457119 (25 bp)
ACAGCTACGGGCAGTATCCATGGTC
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--984--1191Chr10:14457107..14457131 (25 bp)
AGTATCCATGGTCGGTGAAGCAGCT
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--588--1511Chr10:14457125..14457149 (25 bp)
AGCAGCTGGACAGATCGAGCGCGTC
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--941--1652Chr10:14457142..14457166 (25 bp)
AGCGCGTCGCTCAAGGACAGCGAGT
LOC_Os10g28420
OsAffx.6794.1.S1_x_at--344--3393Chr10:14457159..14457183 (25 bp)
CAGCGAGTGCGGGTCGACGACGAGC
LOC_Os10g28420
Target Sequence 
AGTACGGCTACTACGCGCAGTGCTCCCCCGCGCCGTCGTCGTCGGCGTTCACGGCGGCGGCCGCGGCGAGCCCGCCGCGC
GACGCGTCGTACAGCGGCCACTTCGACGACTTCTCGCCGTTCGAGCCGGCCACCGCGCGGAGCAGCCCGTACATTCCGCC
ATCCCCCGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGTTCTTCCCCAACTACATGGCCAACACGCAGTCCTCCCGCGCCA
AGGCGCGTTCCCAGAGCGCGCCGAGGCAGCGCACCGAGCCTCACCTCCCGCAGCCGCCGCCGCCGCCGCCGCACTTCGAG
CGGCAGCCCAGCCGCCGCCGCGGCGGCGGCGTGCCGAGGAGCGTCAAGATGCAGCGTTCGTCGTCGCACGTCGGCGTTCC
GGCGGCGCACGGCTACCACCACCACCACCTCTACAGCTACGGGCAGTATCCATGGTCGGTGAAGCAGCTGGACAGATCGA
GCGCGTCGCTCAAGGACAGCGAGTGCGGGTCGACGACGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6794.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis