Browse Element(s) Details


OsAffx.6938.1.S1_at

Description tigr:9638.m03809
TID=OsAffx.6938.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4174011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41670NANA10+22113302..22114156hypothetical protein
LOC_Os10g41689OsAffx.30473.1.S1_x_at11/1110+22116469..22117530Photosystem II D2 protein, putative
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6938.1.S1_at--40--6951Chr10:22138336..22138360 (25 bp)
GTAGTTGTTTCCGTGCTTGTGCAGC
LOC_Os10g41740
OsAffx.6938.1.S1_at--266--2991Chr10:22138425..22138449 (25 bp)
AATGTCATGATTTTGAGCTCACTCA
LOC_Os10g41740
OsAffx.6938.1.S1_at--357--7531Chr10:22138468..22138492 (25 bp)
GTGGCTATTTGGCTGATGCTAGACA
LOC_Os10g41740
OsAffx.6938.1.S1_at--457--2131Chr10:22138490..22138514 (25 bp)
ACAGGTGTTCAGTCTAGCAGTTCAG
LOC_Os10g41740
OsAffx.6938.1.S1_at--453--51Chr10:22138529..22138553 (25 bp)
ATTGTTGTGGAATGCGCTACTGGGT
LOC_Os10g41740
OsAffx.6938.1.S1_at--351--9931Chr10:22138546..22138570 (25 bp)
TACTGGGTGCTCTATGTCATCATGG
LOC_Os10g41740
OsAffx.6938.1.S1_at--1112--5411Chr10:22138622..22138646 (25 bp)
GAAGCCTGATGCGAATACATTCTTG
LOC_Os10g41740
OsAffx.6938.1.S1_at--886--10251Chr10:22138652..22138676 (25 bp)
TTTGAAGGCTTGCTGCCATTGCAAC
LOC_Os10g41740
OsAffx.6938.1.S1_at--176--10871Chr10:22138758..22138782 (25 bp)
TTGGTTGATTTGTTTTCCCGCTCAT
LOC_Os10g41740
OsAffx.6938.1.S1_at--581--9311Chr10:22138773..22138797 (25 bp)
TCCCGCTCATCTTCGCATGATAAAA
LOC_Os10g41740
OsAffx.6938.1.S1_at--376--9331Chr10:22138818..22138842 (25 bp)
TCGCCACTTCTTTTTCGCAAGCAAA
LOC_Os10g41740
Target Sequence 
GTAGTTGTTTCCGTGCTTGTGCAGCTGTGTGCGCACTGAAATGTGGGCAGCAGATCCATGGAAGGTTGCTAAGAACTGGT
TTTTATCCAAATGTCATGATTTTGAGCTCACTCATTGACATGTACTCAAGATGTGGCTATTTGGCTGATGCTAGACAGGT
GTTCAGTCTAGCAGTTCAGGAAAAGAAGGATACATTGTTGTGGAATGCGCTACTGGGTGCTCTATGTCATCATGGGCATG
GGCAGGAGGTGATAGGATCATTTGTTCAGATGATTCGAGAGAGATGGAAGCCTGATGCGAATACATTCTTGACAGTTTTG
AAGGCTTGCTGCCATTGCAACCTTGTTGAAGAAGGTATAGGATTTTTTGAGTTGATGACTGAGAGATATAGGATTGTTCC
AGGGGAAGATCACTATGTTTGCTTGGTTGATTTGTTTTCCCGCTCATCTTCGCATGATAAAATGGTTGAATTGATCAAAA
GTTCGCCACTTCTTTTTCGCAAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis