Browse Element(s) Details


OsAffx.6975.1.S1_at

Description tigr:9639.m00208
TID=OsAffx.6975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0302010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02950OsAffx.30788.1.S1_at11/1111+1018944..1024495Auxin Efflux Carrier family protein
LOC_Os11g02964OsAffx.30789.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.6974.1.S1_at11/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.23089.1.S1_x_at4/1111+1029410..1037579hypothetical protein
LOC_Os11g02964Os.38171.1.S1_at3/1111+1029410..1037579hypothetical protein
LOC_Os11g02964OsAffx.4843.1.S1_at1/1111+1029410..1037579hypothetical protein
LOC_Os11g02980OsAffx.18644.1.S1_at11/1111+1038154..1039779hypothetical protein
LOC_Os11g02990OsAffx.18645.1.S1_at11/1111+1040773..1042495hypothetical protein
LOC_Os11g03000NANA11+1042804..1044020retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.19306.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03010OsAffx.199.1.S1_at1/1111+1044445..1048607retrotransposon protein, putative, unclassified
LOC_Os11g03020OsAffx.6975.1.S1_at10/1111+1049446..1050791hypothetical protein
LOC_Os11g03030OsAffx.19542.3.S1_x_at6/1111+1054391..1058613retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g03040OsAffx.6976.1.S1_at11/1111+1061636..1064152hypothetical protein
LOC_Os11g03050Os.38774.1.S1_s_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050OsAffx.30790.1.S1_at11/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed
LOC_Os11g03050Os.33623.1.S1_x_at2/1111+1069604..1075608phosphoethanolamine cytidylyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6975.1.S1_at--1125--1991Chr11:1050732..1050756 (25 bp)
ACTCAACCGGGCTGCGATGACAGAG
LOC_Os11g03020
OsAffx.6975.1.S1_at--13--2151Chr11:1050713..1050737 (25 bp)
ACAGAGCCTGCAAAATCTCCCAAGG
LOC_Os11g03020
OsAffx.6975.1.S1_at--331--7572Chr11:1050664..1050688 (25 bp)
GGGCGCTGACCTATCCATGTAAAAG
LOC_Os11g03020
OsAffx.6975.1.S1_at--382--6131Chr11:1050631..1050655 (25 bp)
GAGGGCATGGCACTGGCAATTATAC
LOC_Os11g03020
OsAffx.6975.1.S1_at--254--6171NONE
GAGGAGGAAGCCCTGGTCCAATTCA
NONE
OsAffx.6975.1.S1_at--396--10051Chr11:1049696..1049720 (25 bp)
TAGATCAGCTGGAATCTCGAAGGAT
LOC_Os11g03020
OsAffx.6975.1.S1_at--1127--7031Chr11:1049645..1049669 (25 bp)
GTAATGCTGAGCTTGCCTTAGAGAA
LOC_Os11g03020
OsAffx.6975.1.S1_at--569--1451Chr11:1049618..1049642 (25 bp)
AGAAGCTAGCCGATTTGCCCAAGGT
LOC_Os11g03020
OsAffx.6975.1.S1_at--958--5291Chr11:1049581..1049605 (25 bp)
GAAGTCCAAGCTGAAAGCTTCCATT
LOC_Os11g03020
OsAffx.6975.1.S1_at--807--4919Chr12:12795318..12795421 (24 bp)
GCTTCCATTAAGCATCTAGCTGAAA
NONE
OsAffx.6975.1.S1_at--1151--5291Chr11:1049527..1049551 (25 bp)
GAAGGTGATCCCTGAAACCGATGCT
LOC_Os11g03020
Target Sequence 
ACTCAACCGGGCTGCGATGACAGAGCCTGCAAAATCTCCCAAGGCGATGGCAGTGAAGCGGTTTGGCAGGGCGCTGACCT
ATCCATGTAAAAGAAATAGAAGAGGGCATGGCACTGGCAATTATACAGGACACGGGAGGTGGACGGAGAGGAAGGAATTA
GTGAGTAGATTGGAAGAAGAAGAAAAGAAACGGCTAATCATCCTCAGTGGTATCTGTGGAGGAGGAAGCCCTGGTCCAAT
TCAATCCAACATAGATCAGCTGGAATCTCGAAGGATTGAGCTCTTGGCTCAACTTGAGGAATGTAATGCTGAGCTTGCCT
TAGAGAAGCAGAAGCTAGCCGATTTGCCCAAGGTTGTTGAAGAACAGAAGTCCAAGCTGAAAGCTTCCATTAAGCATCTA
GCTGAAATGACTAAGTCCTTGAAGGTGATCCCTGAAACCGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis