Browse Element(s) Details


OsAffx.6984.1.S1_at

Description tigr:9639.m00280
TID=OsAffx.6984.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g037208/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03650OsAffx.30801.1.S1_at11/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03650Os.52686.1.S1_at1/1111+1415437..1420233NB-ARC domain containing protein, expressed
LOC_Os11g03660NANA11+1424901..1425915VQ motif family protein, expressed
LOC_Os11g03670OsAffx.19468.2.S1_at11/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03670OsAffx.19468.1.S1_s_at10/1111+1429478..1431728Mpv17/PMP22 family protein, expressed
LOC_Os11g03680Os.16604.1.S1_at8/1111+1432751..1434200F-box domain containing protein, expressed
LOC_Os11g03690Os.49338.1.S1_at5/1111+1434830..1436704pentatricopeptide, putative, expressed
LOC_Os11g03700OsAffx.19469.2.S1_x_at11/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03700OsAffx.19469.1.S1_x_at7/1111+1438180..1440578YDG/SRA domain containing protein
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6984.1.S1_at--991--6311NONE
GATGAAATGTCCAATATACCAGAAG
NONE
OsAffx.6984.1.S1_at--131--1751NONE
ACCTTCAGGGCCTTCAGACATGCTG
NONE
OsAffx.6984.1.S1_at--1098--9631NONE
TCAGGGCCTTCAGACATGCTGAGCA
NONE
OsAffx.6984.1.S1_at--1093--7551Chr11:1446401..1446420 (20 bp)
GGGCCTTCAGACATGCTGAGCAACC
LOC_Os11g03720
OsAffx.6984.1.S1_at--617--8591Chr11:1446459..1446481 (23 bp)
TGGTCCGGAGTGGTACTGAAGGTTC
LOC_Os11g03720
OsAffx.6984.1.S1_at--1112--3831Chr11:1447303..1447323 (21 bp)
CTGAAGGTTCCTTCACGAAATTTAT
LOC_Os11g03720
OsAffx.6984.1.S1_at--529--8551Chr11:1447368..1447496 (25 bp)
TGGATGAATATTGCAGGGAGCCTAT
LOC_Os11g03720
OsAffx.6984.1.S1_at--266--3111Chr11:1447374..1447502 (25 bp)
AATATTGCAGGGAGCCTATGGACCT
LOC_Os11g03720
OsAffx.6984.1.S1_at--474--10731Chr11:1447079..1447506 (25 bp)
TTGCAGGGAGCCTATGGACCTGTTT
LOC_Os11g03720
OsAffx.6984.1.S1_at--644--7631Chr11:1447488..1447511 (24 bp)
GGGAGCCTATGGACCTGTTTGGCAC
LOC_Os11g03720
OsAffx.6984.1.S1_at--882--6111Chr11:1447583..1447854 (25 bp)
GAGTGGAGCTAGATTGGACGGAGGC
LOC_Os11g03720
Target Sequence 
GATGAAATGTCCAATATACCAGAAGGAAAATAAAGGTGCTGTGACTGTAACTAGCACCTTCAGGGCCTTCAGACATGCTG
AGCAACCGGCGTTGAGGACCTTGTTGGCACCCGAGAAGAGGTTGTTGGTCCGGAGTGGTACTGAAGGTTCCTTCACGAAA
TTTATAAATGCACCTTACAAATCTGAATGCTTGGAGTTATATGAGATGATGGATGAATATTGCAGGGAGCCTATGGACCT
GTTTGGCACAGCTCCAGCTCTAACTCTACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCACCAAAACTAG
GAGTGGAGCTAGATTGGACGGAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6984.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis