Browse Element(s) Details


OsAffx.6986.1.S1_at

Description tigr:9639.m00282
TID=OsAffx.6986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0374011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03710Os.23141.1.S1_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03710Os.23141.1.S1_x_at10/1111+1441729..1443651small zinc finger, putative, expressed
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6986.1.S1_at--606--4171Chr11:1468292..1468316 (25 bp)
CCCTGTACGGTGCATGCAAGACCGT
LOC_Os11g03740
OsAffx.6986.1.S1_at--432--5811Chr11:1468197..1468221 (25 bp)
GACGCCGCCGGCTTCAAGGACTACG
LOC_Os11g03740
OsAffx.6986.1.S1_at--1114--5071Chr11:1468133..1468157 (25 bp)
GCACCAAGTCCAAGATAGACGGCAT
LOC_Os11g03740
OsAffx.6986.1.S1_at--911--7271Chr11:1468126..1468150 (25 bp)
GTCCAAGATAGACGGCATCCTCCAG
LOC_Os11g03740
OsAffx.6986.1.S1_at--993--1311Chr11:1468070..1468094 (25 bp)
AGAGGCGGTGCCTCCAGTCGTGCCA
LOC_Os11g03740
OsAffx.6986.1.S1_at--653--9111Chr11:1468028..1468052 (25 bp)
TGCTGCGAGCTCAGCCTGGCATCGT
LOC_Os11g03740
OsAffx.6986.1.S1_at--57--9151Chr11:1468025..1468049 (25 bp)
TGCGAGCTCAGCCTGGCATCGTCGC
LOC_Os11g03740
OsAffx.6986.1.S1_at--1054--9171Chr11:1467980..1468004 (25 bp)
TGCCGGAGGCGATTTCAGCGCTGGA
LOC_Os11g03740
OsAffx.6986.1.S1_at--833--1451Chr11:1467956..1467980 (25 bp)
AGAAGTCGGCCAGCGGTGCAGGAAT
LOC_Os11g03740
OsAffx.6986.1.S1_at--1152--3471Chr11:1467938..1467962 (25 bp)
CAGGAATGCGAGAATGGTTTCGGCA
LOC_Os11g03740
OsAffx.6986.1.S1_at--1048--3011Chr11:1467934..1467958 (25 bp)
AATGCGAGAATGGTTTCGGCAAGAG
LOC_Os11g03740
Target Sequence 
CCCTGTACGGTGCATGCAAGACCGTCGCCGGCAACAGCGGGGTGGTCAGCGTCACGTTCTGCATCTACGCACTCAGCTCC
GACAACCGGAGCCACGACGCCGCCGGCTTCAAGGACTACGCCGTCGTCACCGTCGACCTCATCACGGCCAACGCGACGAG
CACCAAGTCCAAGATAGACGGCATCCTCCAGAACGGCGGCGGCGGCGGCGCCGGCGACGCCAAGAGGCGGTGCCTCCAGT
CGTGCCAGGCGGCGTACGCCGGCGTGCTGCGAGCTCAGCCTGGCATCGTCGCCGACGTGCAGGGCGGCCGGTTGCCGGAG
GCGATTTCAGCGCTGGAGAAGTCGGCCAGCGGTGCAGGAATGCGAGAATGGTTTCGGCAAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis