Browse Element(s) Details


OsAffx.7199.1.S1_at

Description tigr:9639.m02265
TID=OsAffx.7199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2547011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25420OsAffx.13122.3.S1_at10/1111+13992742..13993384hypothetical protein
LOC_Os11g25420OsAffx.22604.1.S1_x_at1/1111+13992742..13993384hypothetical protein
LOC_Os11g25430OsAffx.5008.1.S1_at2/1111+13998208..13999999retrotransposon protein, putative, unclassified
LOC_Os11g25440OsAffx.24114.1.S1_at11/1111+14000917..14001668hypothetical protein
LOC_Os11g25440Os.52448.1.S1_x_at1/1111+14000917..14001668hypothetical protein
LOC_Os11g25454Os.10315.1.S1_at10/1111+14009504..14016057UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g25470OsAffx.7199.1.S1_at11/1111+14016650..14017506hypothetical protein
LOC_Os11g25470OsAffx.7199.2.S1_x_at1/1111+14016650..14017506hypothetical protein
LOC_Os11g25480OsAffx.19006.1.S1_at11/1111+14019116..14019521hypothetical protein
LOC_Os11g25490OsAffx.31129.1.S1_at11/1111+14021140..14022240hypothetical protein
LOC_Os11g25490OsAffx.10110.3.S1_s_at1/1111+14021140..14022240hypothetical protein
LOC_Os11g25500Os.24032.2.S1_at10/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25500Os.7207.1.S1_at4/1111+14022382..14024499transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g25510Os.56220.1.S1_at11/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.4190.1.S1_x_at2/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25510OsAffx.26628.1.S1_x_at1/1111+14025422..14026945Protein kinase domain containing protein, expressed
LOC_Os11g25520Os.35344.18.S1_x_at9/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520Os.35344.3.S1_x_at8/1111+14035649..14041544transposon protein, putative, Mutator sub-class
LOC_Os11g25520OsAffx.22940.5.S1_x_at3/1111+14035649..14041544transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7199.1.S1_at--1092--2511Chr11:14017406..14017430 (25 bp)
AACTTAGTGTAGTTTGCCCTGTTAG
LOC_Os11g25470
OsAffx.7199.1.S1_at--878--593Chr11:14017344..14017368 (25 bp)
ATGCCTGAAATTTCTGTGCGCCTGA
LOC_Os11g25470
OsAffx.7199.1.S1_at--784--193Chr11:14017335..14017359 (25 bp)
ATTTCTGTGCGCCTGAGTGGCATGC
LOC_Os11g25470
OsAffx.7199.1.S1_at--689--5372Chr11:14017308..14017332 (25 bp)
GAAGACAATGCATCTAGCCTGGTCA
LOC_Os11g25470
OsAffx.7199.1.S1_at--416--293Chr11:14017017..14017041 (25 bp)
ATAGATCCCAAATCCGTGCATCAGG
LOC_Os11g25470
OsAffx.7199.1.S1_at--947--9052Chr11:14017001..14017025 (25 bp)
TGCATCAGGAGCACAACCTTCAGAT
LOC_Os11g25470
OsAffx.7199.1.S1_at--576--4052Chr11:14016934..14016958 (25 bp)
CGATCTGCTTACTATTTTGCACGAA
LOC_Os11g25470
OsAffx.7199.1.S1_at--80--3992Chr11:14016830..14016854 (25 bp)
CGGGAGCAACACAGCTTCGCAGGGA
LOC_Os11g25470
OsAffx.7199.1.S1_at--955--3612Chr11:14016816..14016840 (25 bp)
CTTCGCAGGGATCCGGCAAAACGGC
LOC_Os11g25470
OsAffx.7199.1.S1_at--75--1651Chr11:14016775..14016799 (25 bp)
AGCGAGAGTAGCACAGCTTCGCAGG
LOC_Os11g25470
OsAffx.7199.1.S1_at--922--4692Chr11:14016726..14016750 (25 bp)
GCGGCTTCGCAAGGATCCGGCAAGA
LOC_Os11g25470
Target Sequence 
AACTTAGTGTAGTTTGCCCTGTTAGTGCTCTAAGGGGTTGTTTGGTTGCTGCCCTGAGCAACATGCCTGAAATTTCTGTG
CGCCTGAGTGGCATGCGAGAAGACAATGCATCTAGCCTGGTCAGGGAAAAAAAGAGAGAGGAGAACGCAATCGAAGAGTC
AAATAGATCCCAAATCCGTGCATCAGGAGCACAACCTTCAGATGATTCTGCCCAGATGTGCAAATGCATCTGGCAACCTG
CAAATCGATCTGCTTACTATTTTGCACGAAAGGCAGCCTGGGCAGCATCTAGCATGGGCGGTGCTGCTATGCTGGGATCC
GGCAAGACGGCGACAGCTTCACCCGCCGGCGGGAGCAACACAGCTTCGCAGGGATCCGGCAAAACGGCGGTGGCTTCGCA
CGCCAGCGAGAGTAGCACAGCTTCGCAGGGATTACAAAAGACGGCGGGCGGCGGCGGCTTCGCAAGGATCCGGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis