Browse Element(s) Details


OsAffx.7437.1.S1_at

Description tigr:9639.m04379
TID=OsAffx.7437.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4706011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47000OsAffx.19417.1.S1_x_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.1.S1_at11/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_x_at8/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.19417.2.S1_at4/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000OsAffx.31524.1.S1_x_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47000Os.46824.2.S1_at1/1111+27688448..27692198Leucine Rich Repeat family protein
LOC_Os11g47010NANA11+27692707..27693747retrotransposon protein, putative, unclassified
LOC_Os11g47019OsAffx.31526.1.S1_at11/1111+27694479..27695027hypothetical protein
LOC_Os11g47030OsAffx.19418.1.S1_at11/1111+27697364..27700795Leucine Rich Repeat family protein
LOC_Os11g47040NANA11+27708780..27709285expressed protein
LOC_Os11g47050Os.10827.1.S1_x_at3/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47050Os.46055.2.S1_x_at2/1111+27713071..27714945transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47060OsAffx.7437.1.S1_at11/1111+27715235..27715606expressed protein
LOC_Os11g47070OsAffx.25936.2.S1_x_at5/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.7.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.1.S1_s_at3/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.25936.5.S1_x_at2/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47070OsAffx.17387.1.S1_s_at1/1111+27718121..27721184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47080Os.26886.3.S1_x_at2/1111+27728221..27731113transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g47089NANA11+27732938..27733366NA
LOC_Os11g47100OsAffx.31522.2.S1_at10/1111+27734631..27736464hypothetical protein
LOC_Os11g47100Os.38403.1.S1_s_at1/1111+27734631..27736464hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7437.1.S1_at--49--1091Chr11:27715446..27715470 (25 bp)
AGGGCGAGCGGCGAACACTAGAAGA
LOC_Os11g47060
OsAffx.7437.1.S1_at--1068--8671Chr11:27715289..27715313 (25 bp)
TGTGACGGGCACAAACTGCAGGTCT
LOC_Os11g47060
OsAffx.7437.1.S1_at--195--8951Chr11:27715287..27715311 (25 bp)
TGACGGGCACAAACTGCAGGTCTGT
LOC_Os11g47060
OsAffx.7437.1.S1_at--103--1911Chr11:27715285..27715309 (25 bp)
ACGGGCACAAACTGCAGGTCTGTCA
LOC_Os11g47060
OsAffx.7437.1.S1_at--372--7611Chr11:27715283..27715307 (25 bp)
GGGCACAAACTGCAGGTCTGTCACA
LOC_Os11g47060
OsAffx.7437.1.S1_at--220--5131Chr11:27715281..27715305 (25 bp)
GCACAAACTGCAGGTCTGTCACAAA
LOC_Os11g47060
OsAffx.7437.1.S1_at--872--2191Chr11:27715279..27715303 (25 bp)
ACAAACTGCAGGTCTGTCACAAATG
LOC_Os11g47060
OsAffx.7437.1.S1_at--1077--1951Chr11:27715275..27715299 (25 bp)
ACTGCAGGTCTGTCACAAATGAGGC
LOC_Os11g47060
OsAffx.7437.1.S1_at--601--5011Chr11:27715272..27715296 (25 bp)
GCAGGTCTGTCACAAATGAGGCCAC
LOC_Os11g47060
OsAffx.7437.1.S1_at--1067--7171Chr11:27715268..27715292 (25 bp)
GTCTGTCACAAATGAGGCCACCTGT
LOC_Os11g47060
OsAffx.7437.1.S1_at--1135--3871Chr11:27715266..27715290 (25 bp)
CTGTCACAAATGAGGCCACCTGTGA
LOC_Os11g47060
Target Sequence 
AGGGCGAGCGGCGAACACTAGAAGAGGTCGAGAGAGTGAGGTCACCTGTGACGGGCACAAACTGCAGGTCTGTCACAAAT
GAGGCCACCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis