Browse Element(s) Details


OsAffx.7457.1.S1_at

Description tigr:9640.m00072
TID=OsAffx.7457.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0172010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01660NANA12+399407..400441retrotransposon protein, putative, unclassified
LOC_Os12g01680OsAffx.25952.3.S1_at9/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_s_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01680OsAffx.25952.1.S1_x_at2/1112+410349..412454Macrophage migration inhibitory factor family protein
LOC_Os12g01690OsAffx.31541.1.S1_s_at1/1112+413959..414621PRA1 family protein
LOC_Os12g01700Os.47316.2.S1_at8/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01700Os.47316.1.S1_at2/1112+417325..420583Leucine Rich Repeat family protein, expressed
LOC_Os12g01710OsAffx.18625.4.S1_x_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.5.S1_s_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.4.S1_at11/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_x_at6/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.18625.3.S1_at2/1112+421126..424359hypothetical protein
LOC_Os12g01710OsAffx.5875.1.S1_at1/1112+421126..424359hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_x_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.7457.1.S1_at10/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.6959.1.S1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01720OsAffx.30274.1.A1_x_at1/1112+424940..427263hypothetical protein
LOC_Os12g01730Os.56166.1.S1_at11/1112+433076..437615Multicopper oxidase family protein, expressed
LOC_Os12g01740Os.6829.1.S1_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740OsAffx.31542.1.S1_x_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_s_at11/1112+438035..442649Protein kinase domain containing protein, expressed
LOC_Os12g01740Os.12549.1.S1_at3/1112+438035..442649Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7457.1.S1_at--169--851Chr12:425031..425055 (25 bp)
ATGGCATCGAGGACTGCGACGGCAA
LOC_Os12g01720
OsAffx.7457.1.S1_at--404--511Chr12:425036..425060 (25 bp)
ATCGAGGACTGCGACGGCAACAGCT
LOC_Os12g01720
OsAffx.7457.1.S1_at--290--4631Chr12:425102..425126 (25 bp)
GCGATGGCGGTAGCTCTCGAGACCT
LOC_Os12g01720
OsAffx.7457.1.S1_at--406--10011Chr12:425112..425136 (25 bp)
TAGCTCTCGAGACCTCCCGTCATGG
LOC_Os12g01720
OsAffx.7457.1.S1_at--567--3811Chr12:425210..425234 (25 bp)
CTCCTGAGCCCTCCGGTGTGGATGA
LOC_Os12g01720
OsAffx.7457.1.S1_at--302--3811Chr12:425245..425269 (25 bp)
CTCCCGCACAGATGGTGTCGAGGAT
LOC_Os12g01720
OsAffx.7457.1.S1_at--288--3811NONE
CTCCTGCGGTGGTCGCGGCAACGTC
NONE
OsAffx.7457.1.S1_at--1024--3251Chr12:426277..426301 (25 bp)
CAACAGGCGGCGGAAACCCTCCCAG
LOC_Os12g01720
OsAffx.7457.1.S1_at--724--4151Chr12:426298..426322 (25 bp)
CCAGCCTTGCCCAGGAAAGGGTACG
LOC_Os12g01720
OsAffx.7457.1.S1_at--424--1691Chr12:426300..426324 (25 bp)
AGCCTTGCCCAGGAAAGGGTACGAG
LOC_Os12g01720
OsAffx.7457.1.S1_at--916--971Chr12:426323..426347 (25 bp)
AGGAGATGGTGCAGTTGCGCTGGGC
LOC_Os12g01720
Target Sequence 
ATGGCATCGAGGACTGCGACGGCAACAGCTCCAGAGACCTCCCGCCGCAGATGGCGTCGAGGACGGCGGTGGCGATGGCG
GTAGCTCTCGAGACCTCCCGTCATGGATCGAGGACAGAGGCGGCGGTGGCGGCTCCCGAGCCCTCCCGCCACAGATGGTG
TCGAGGACGGCGGCGGCGACTCCTGAGCCCTCCGGTGTGGATGACTCCCGAGCCCTCCCGCACAGATGGTGTCGAGGATG
GCGGCAGCGACAGCTCCATAGACCTCTCGCTGCAGATGGCGTCTAGGACGGCGGCGGCGGCTCCCGAGCCCTCCTGCGGT
GGTCGCGGCAACGTCCGGGCAACAGGCGGCGGAAACCCTCCCAGCCTTGCCCAGGAAAGGGTACGAGGAGATGGTGCAGT
TGCGCTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis