Browse Element(s) Details


OsAffx.7481.1.S1_at

Description tigr:9640.m00348
TID=OsAffx.7481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0433011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04360Os.11301.1.S1_x_at10/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04360Os.11301.1.S1_at9/1112+1850395..1851189EF hand family protein, expressed
LOC_Os12g04370OsAffx.31575.1.S1_x_at11/1112+1852598..1857136GRAS family transcription factor containing protein
LOC_Os12g04380OsAffx.19487.1.S1_x_at11/1112+1858794..1860188GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7481.1.S1_at--485--4691Chr12:1833760..1833784 (25 bp)
GCGGCAAACGTGTGCTTGGACCATT
LOC_Os12g04330
OsAffx.7481.1.S1_at--14--7392Chr12:1833777..1833801 (25 bp)
GGACCATTATAAGTTGGGCCGGAAT
LOC_Os12g04330
OsAffx.7481.1.S1_at--892--8531Chr12:1834045..1834068 (24 bp)
TGGAGAAGATTACCCTGAAGGAGCT
LOC_Os12g04330
OsAffx.7481.1.S1_at--172--9171Chr12:1834084..1834108 (25 bp)
TGCCGGAATGGGTTTACCACTTACA
LOC_Os12g04330
OsAffx.7481.1.S1_at--645--10411Chr12:1834097..1834121 (25 bp)
TTACCACTTACATGCAGGCTGGGCC
LOC_Os12g04330
OsAffx.7481.1.S1_at--265--6191Chr12:1834117..1834219 (25 bp)
GGGCCGGAACCATCGTTAATCTATG
LOC_Os12g04330
OsAffx.7481.1.S1_at--98--631Chr12:1834217..1834241 (25 bp)
ATGCTTTTCTAGTTAATGAGGCCGA
LOC_Os12g04330
OsAffx.7481.1.S1_at--914--8851Chr12:1834254..1834278 (25 bp)
TGATGAACAGCTGCGACTCGAGGAA
LOC_Os12g04330
OsAffx.7481.1.S1_at--606--1591Chr12:1834312..1834336 (25 bp)
AGCTCGATCGTGAGTGCCACAGTGG
LOC_Os12g04330
OsAffx.7481.1.S1_at--360--1371Chr12:1834337..1834361 (25 bp)
AGAGCGGAGTTCAGAAGCACCTTGA
LOC_Os12g04330
OsAffx.7481.1.S1_at--583--1512Chr12:1834352..1834376 (25 bp)
AGCACCTTGAGCCAATGAGCCATGT
LOC_Os12g04330
Target Sequence 
GCGGCAAACGTGTGCTTGGACCATTATAAGTTGGGCCGGAATGGAGAAGATTACCCTGAAGGAGCTGCCTCCAAGAAGTT
GTGCCGGAATGGGTTTACCACTTACATGCAGGCTGGGCCGGAACCATCGTTAATCTATGCTTTTCTAGTTAATGAGGCCG
AGGATGTAGTCGTTGATGAACAGCTGCGACTCGAGGAAAGGGACGAGCTGGTGGAAGGACTGTGCGCCACCAGCTCGATC
GTGAGTGCCACAGTGGAGAGCGGAGTTCAGAAGCACCTTGAGCCAATGAGCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis