Browse Element(s) Details


OsAffx.7594.1.S1_at

Description tigr:9640.m01414
TID=OsAffx.7594.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Tetraspanin family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1458011/11Tetraspanin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14550OsAffx.31742.1.S1_at10/1112+8303801..8305148hypothetical protein
LOC_Os12g14550Os.27790.1.A1_at3/1112+8303801..8305148hypothetical protein
LOC_Os12g14570Os.12008.3.S1_at3/1112+8314938..8315285hypothetical protein
LOC_Os12g14580OsAffx.7594.1.S1_at11/1112+8325263..8326965Tetraspanin family protein
LOC_Os12g14590OsAffx.7595.1.S1_at11/1112+8332026..8332583hypothetical protein
LOC_Os12g14600OsAffx.8338.1.S1_x_at2/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.22240.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14600OsAffx.10020.1.S1_x_at1/1112+8335097..8336274retrotransposon protein, putative, unclassified
LOC_Os12g14610OsAffx.19669.1.S1_at10/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.2159.1.S1_at1/1112+8338893..8345239Protein kinase domain containing protein
LOC_Os12g14610OsAffx.18976.1.S1_x_at1/1112+8338893..8345239Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7594.1.S1_at--734--1751Chr12:8325615..8325639 (25 bp)
ACCTCGGCGGCGTAAGTATTCGCGA
LOC_Os12g14580
OsAffx.7594.1.S1_at--652--8631Chr12:8325698..8325722 (25 bp)
TGGGAAACAACCAGCGCATGCCTAC
LOC_Os12g14580
OsAffx.7594.1.S1_at--1042--1911Chr12:8325726..8325750 (25 bp)
ACGGGAACGTCTGCAGCGGCATGAC
LOC_Os12g14580
OsAffx.7594.1.S1_at--740--671Chr12:8325746..8325770 (25 bp)
ATGACGCGGTTGGTACGCGACCCAG
LOC_Os12g14580
OsAffx.7594.1.S1_at--450--1411Chr12:8325769..8325793 (25 bp)
AGACACCGGCATATTCGTCCCTGAG
LOC_Os12g14580
OsAffx.7594.1.S1_at--224--7251Chr12:8325785..8325809 (25 bp)
GTCCCTGAGTTATCCCGGTATGAAA
LOC_Os12g14580
OsAffx.7594.1.S1_at--411--7331Chr12:8325842..8325865 (24 bp)
GTGCACGTAATGTCGCCTATCGAGT
LOC_Os12g14580
OsAffx.7594.1.S1_at--161--2371Chr12:8326828..8326852 (25 bp)
AAAGCCTGGAGTTTCGATGCCCTGT
LOC_Os12g14580
OsAffx.7594.1.S1_at--441--6711Chr12:8326851..8326875 (25 bp)
GTATCCAATTCTCGCGTTGGTCGGA
LOC_Os12g14580
OsAffx.7594.1.S1_at--194--6631Chr12:8326866..8326890 (25 bp)
GTTGGTCGGAGCCTTTCTTTCATGC
LOC_Os12g14580
OsAffx.7594.1.S1_at--280--10571Chr12:8326880..8326904 (25 bp)
TTCTTTCATGCTTTGCAGGCGTCAA
LOC_Os12g14580
Target Sequence 
ACCTCGGCGGCGTAAGTATTCGCGAGTACAATCTGGAGGAGTACAGCGGGTGGCTCAGGGGCCGTGTGGCCGACCCGCAC
TACTGGGAAACAACCAGCGCATGCCTACGCGACGGGAACGTCTGCAGCGGCATGACGCGGTTGGTACGCGACCCAGACAC
CGGCATATTCGTCCCTGAGTTATCCCGGTATGAAAGGTGGCTCAAGGAACATGGGATTAAAAAAGGCGTGCACGTAATGT
CGCCTATCGAGTCTGGATGCTGCAAGCCACCGACATCATGTGGTTTCAGATATGTCAACGGGACGACGTGGATACCAACA
CCAGCAGCAGCAGGCACCCCTGCCGCGGCGACCAACGTCGACTGCAGCAGGTGGAGCAACAACCAACAGACGCTCTGCTT
CCAGTGCGACTCATGCAAGGCTGGCTTCCTGGACGACATCAAGAAAGCCTGGAGTTTCGATGCCCTGTATCCAATTCTCG
CGTTGGTCGGAGCCTTTCTTTCATGCTTTGCAGGCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis