Browse Element(s) Details


OsAffx.7903.2.S1_x_at

Description gb:NM_197833.1
DB_XREF= gi:37537025
TID=OsAffx.7903.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C07.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4208011/11hypothetical protein
LOC_Os03g392845/11retrotransposon protein, putative, unclassified
LOC_Os03g393703/11hypothetical protein
LOC_Os10g420723/11hypothetical protein
LOC_Os03g392403/11hypothetical protein
LOC_Os03g392201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42050OsAffx.22947.1.S1_x_at8/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.3.S1_x_at3/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42050OsAffx.22947.5.S1_x_at2/1110+22284658..22291017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g42060Os.46801.2.S1_x_at11/1110+22298277..22299164Ribosome inactivating protein
LOC_Os10g42066OsAffx.7903.1.S1_at9/1110+22300114..22301588hypothetical protein
LOC_Os10g42072OsAffx.7903.2.S1_x_at3/1110+22302310..22303149hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42080OsAffx.7903.2.S1_x_at11/1110+22305295..22306113hypothetical protein
LOC_Os10g42090Os.49269.1.A1_x_at11/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_x_at10/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42090Os.12928.1.S1_at8/1110+22306396..22310415nuclear protein E3-3, isoform a, putative, expressed
LOC_Os10g42100Os.12158.1.S2_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42100Os.12158.1.S1_at11/1110+22311234..22317103Pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
LOC_Os10g42110Os.46089.1.S1_at11/1110+22320335..22324577protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7903.2.S1_x_at--1056--9813Chr03:21747714..21747738 (25 bp)
TAACATGGCGTCCTATGTGCTGGAT
LOC_Os03g39240
OsAffx.7903.2.S1_x_at--43--3713Chr03:21747726..21747748 (23 bp)
CTATGTGCTGGATCTCAGGAGGGCT
LOC_Os03g39240
OsAffx.7903.2.S1_x_at--625--9595Chr03:21747911..21747935 (25 bp)
TCATTCCGGAGCTTGCGGCGCTGAT
LOC_Os03g39240
OsAffx.7903.2.S1_x_at--160--612Chr10:22305636..22305660 (25 bp)
ATGCGCGAGTCCACCAAATCACGGG
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--949--3832Chr10:22305609..22305633 (25 bp)
CTGCAGGACTCCTCCGGCGGTGATG
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--679--4253Chr10:22305572..22305596 (25 bp)
CCGGGTTGTTGGACAGCGCGATCAA
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--176--5654Chr10:22305561..22305585 (25 bp)
GACAGCGCGATCAAGTTCGAGGACG
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--863--6371Chr10:22305418..22305442 (25 bp)
GATCGCGGAAGCACAAGCGTTCTCC
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--14--6731Chr10:22305400..22305424 (25 bp)
GTTCTCCGCAACCTTGTCAGCAGCA
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--1103--7091Chr10:22305385..22305409 (25 bp)
GTCAGCAGCAAGTCTCGTGTTCGTG
LOC_Os10g42080
OsAffx.7903.2.S1_x_at--831--5171Chr10:22305378..22305402 (25 bp)
GCAAGTCTCGTGTTCGTGCAGAAGA
LOC_Os10g42080
Target Sequence 
TAACATGGCGTCCTATGTGCTGGATCTCAGGAGGGCTCTGGCCGTGTTCGCCGGGACAGGGAGGCCCGAGGAGGCGGTGC
TCAGGAAGAACGTCGCGTGGGCCGACGCGCGCCGCGCGGAGGCGGTGGAGATCGCCTCCGCCGCGCGCCGCTTGCTGGAG
AAGGAGCTCAGGTGCATGGCGGCGAGAGACCACCCCGTCATTCCGGAGCTTGCGGCGCTGATCACCGCCATGCGCGAGTC
CACCAAATCACGGGTCCTGCAGGACTCCTCCGGCGGTGATGCCGTCCGTAGGGCCGGGTTGTTGGACAGCGCGATCAAGT
TCGAGGACGCCGTGGTGGAGAAGATGACCGCGTTGAAGGAGAAGTTCACGCGTGGCGCGGCGGCCTTCGCGGGCGAGGAG
GAGCTCGTGCAGGCGCTGCAGAAGCACGCCGCAACGGCCGAGGCGGAGATCGCGGAAGCACAAGCGTTCTCCGCAACCTT
GTCAGCAGCAAGTCTCGTGTTCGTGCAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7903.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis