Browse Element(s) Details


OsAffx.8005.1.S1_at

Description gb:NM_197089.1
DB_XREF= gi:37535537
TID=OsAffx.8005.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3455011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8005.1.S1_at--1049--7371Chr10:18097071..18097095 (25 bp)
GTGACCGTGCTGTTGTCCGTGGCCT
LOC_Os10g34550
OsAffx.8005.1.S1_at--1082--4491Chr10:18097038..18097062 (25 bp)
GCCGTCTTCGGCGTCTTGCTGTTCG
LOC_Os10g34550
OsAffx.8005.1.S1_at--1127--7691Chr10:18097013..18097037 (25 bp)
GGGTCTGGATGAACCCCATCGTTTC
LOC_Os10g34550
OsAffx.8005.1.S1_at--746--8971Chr10:18097004..18097028 (25 bp)
TGAACCCCATCGTTTCCATCGACGG
LOC_Os10g34550
OsAffx.8005.1.S1_at--940--5431Chr10:18096861..18096885 (25 bp)
GACACGTACACGAACGGCACCGTCT
LOC_Os10g34550
OsAffx.8005.1.S1_at--485--7611Chr10:18096785..18096809 (25 bp)
GGGACGTCACGCTGACCGCGTTCTC
LOC_Os10g34550
OsAffx.8005.1.S1_at--238--3791Chr10:18096675..18096699 (25 bp)
CTCGACGTGACGGTGTCGTACGACA
LOC_Os10g34550
OsAffx.8005.1.S1_at--61--7451Chr10:18096663..18096687 (25 bp)
GTGTCGTACGACAGATCGCAAGTGC
LOC_Os10g34550
OsAffx.8005.1.S1_at--563--1271Chr10:18096651..18096675 (25 bp)
AGATCGCAAGTGCACGAGCCCTACT
LOC_Os10g34550
OsAffx.8005.1.S1_at--535--9671Chr10:18096620..18096644 (25 bp)
TCAGCCATGGGTTCCGTGCCATGTG
LOC_Os10g34550
OsAffx.8005.1.S1_at--877--7191Chr10:18096553..18096577 (25 bp)
GTCGTGCACCGTCGTGAGGATACCC
LOC_Os10g34550
Target Sequence 
GTGACCGTGCTGTTGTCCGTGGCCTTCGTCGTCGCCGTCTTCGGCGTCTTGCTGTTCGGGGTCTGGATGAACCCCATCGT
TTCCATCGACGGCGTCTCCGCCACGGGGCTCGACGCCGCCGCCGGGAAGAACGCCTCCGCCGCCACCACCGTCTCCCCGT
CGTTCGACGTCGCCGTGCGGCTCAGGCGGAGGTGGTTCCGCCTCCTCCCGGACACGTACACGAACGGCACCGTCTCCGTG
TCGTTCGCCGGCGCCGGGGGCGCGGCCGTCGCGCGCGGCGCGCTCCGGGACGTCACGCTGACCGCGTTCTCCCCGTCCGT
GGTGTCGGCGACGGCGCGCGCCCCGCCCACCGCCCTTCTCGCCGCCGGCGAGCTGCGGCGCGGCGGGGAGGTTCGCCTCG
ACGTGACGGTGTCGTACGACAGATCGCAAGTGCACGAGCCCTACTCGCCGCTCAGCCATGGGTTCCGTGCCATGTGCGCC
GCGACGGCGCTCGGCGGAGGGAACTCGACGGCGGCGGCGTCGTGCACCGTCGTGAGGATACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8005.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis