Browse Element(s) Details


OsAffx.8415.1.S1_at

Description tigr:9638.m00917
TID=OsAffx.8415.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1042011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10360Os.25330.1.S1_at11/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10360Os.25330.2.S1_at10/1110+5459519..5464010NB-ARC domain containing protein, expressed
LOC_Os10g10370OsAffx.30375.1.S1_at11/1110+5466421..5467745hypothetical protein
LOC_Os10g10380NANA10+5470171..5476033retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g10390OsAffx.30376.1.S1_x_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10390OsAffx.30376.1.S1_at11/1110+5476810..5477784F-box domain containing protein
LOC_Os10g10400Os.8747.3.S1_x_at11/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.8747.3.S1_at10/1110+5480406..5482087hypothetical protein
LOC_Os10g10400Os.33750.2.S1_x_at1/1110+5480406..5482087hypothetical protein
LOC_Os10g10410OsAffx.30377.1.S1_at11/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10410OsAffx.30376.1.S1_x_at1/1110+5483721..5484971F-box domain containing protein
LOC_Os10g10420OsAffx.8415.1.S1_at11/1110+5486915..5488261F-box domain containing protein
LOC_Os10g10434Os.5604.1.S1_a_at11/1110+5497011..5502515dimethyladenosine transferase, putative, expressed
LOC_Os10g10450OsAffx.25260.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10450OsAffx.30486.1.S1_at1/1110+5505467..5509334retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460Os.27691.1.S1_x_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g10460OsAffx.19532.1.S1_at1/1110+5512179..5517934retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8415.1.S1_at--9--6211Chr10:5487478..5487502 (25 bp)
GAGGCTAGACGATCATCAGGTCCCA
LOC_Os10g10420
OsAffx.8415.1.S1_at--989--1031Chr10:5487461..5487485 (25 bp)
AGGTCCCAAGATGAGCAGCTACACG
LOC_Os10g10420
OsAffx.8415.1.S1_at--433--2691Chr10:5487265..5487289 (25 bp)
AAGCTGAGCTTCATCGTCACCTCAA
LOC_Os10g10420
OsAffx.8415.1.S1_at--1066--9231Chr10:5487249..5487273 (25 bp)
TCACCTCAAGGTATTTCGACGGCTC
LOC_Os10g10420
OsAffx.8415.1.S1_at--117--5191Chr10:5487186..5487210 (25 bp)
GCAATGGCGGTTGTACGCGCGAACA
LOC_Os10g10420
OsAffx.8415.1.S1_at--168--7391Chr10:5487160..5487184 (25 bp)
GTGAGCGTCTGTACATGGCGCGTCA
LOC_Os10g10420
OsAffx.8415.1.S1_at--288--10771Chr10:5487124..5487148 (25 bp)
TTGAGAGTGCATCGCTCTGACGCCA
LOC_Os10g10420
OsAffx.8415.1.S1_at--939--9471Chr10:5487109..5487133 (25 bp)
TCTGACGCCATGAACCTGAGGTGGT
LOC_Os10g10420
OsAffx.8415.1.S1_at--467--1331Chr10:5487078..5487102 (25 bp)
AGAGGAGTGGCTTGCTCTTCTTCAC
LOC_Os10g10420
OsAffx.8415.1.S1_at--130--9571Chr10:5487063..5487087 (25 bp)
TCTTCTTCACAATCGACGCCAAAGG
LOC_Os10g10420
OsAffx.8415.1.S1_at--860--1991Chr10:5487031..5487055 (25 bp)
ACTCCTGGTGCTTATGTGCTCAACA
LOC_Os10g10420
Target Sequence 
GAGGCTAGACGATCATCAGGTCCCAAGATGAGCAGCTACACGCTCCACAACCTCAGGCAGAGCGTCGTCCATGGCGGCGT
GGCCTACTGGCCCCTGGCGCACACGGCATTCGCCGTGCGCGCCGACACGCCGGAGCCCGAAGAGATGCCGATGCCGCCGG
CCGTTCCAAAGGCGCCGCCGCACGACCATCTGCTCGGCATCAGCCCGGACGGCAAGCTGAGCTTCATCGTCACCTCAAGG
TATTTCGACGGCTCCGCCGGAGTGTCAAGCTGCTACCACCTTGCTTTCGGCAGCAATGGCGGTTGTACGCGCGAACAGGT
GAGCGTCTGTACATGGCGCGTCAGGTTGCATGAGTTGAGAGTGCATCGCTCTGACGCCATGAACCTGAGGTGGTTTTGCG
AGAGGAGTGGCTTGCTCTTCTTCACAATCGACGCCAAAGGGAGCAGCACTCCTGGTGCTTATGTGCTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis