Browse Element(s) Details


OsAffx.8785.1.S1_at

Description gb:XM_353943.1
DB_XREF= gi:35189319
TID=OsAffx.8785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g026502/11expressed protein
LOC_Os03g330601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02590Os.52636.1.S1_at4/116+912780..920283START domain-containing protein, putative, expressed
LOC_Os06g02600Os.5273.2.S1_x_at10/116+921217..924267DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610OsAffx.27445.2.S1_x_at11/116+924433..925154hypothetical protein
LOC_Os06g02610OsAffx.27445.1.S1_x_at4/116+924433..925154hypothetical protein
LOC_Os06g02620Os.44821.1.A1_x_at10/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02620Os.7738.1.S1_at8/116+926340..931584DnaJ C terminal region family protein, expressed
LOC_Os06g02630Os.32596.1.S1_x_at11/116+932239..935006expressed protein
LOC_Os06g02630OsAffx.27427.1.S1_at1/116+932239..935006expressed protein
LOC_Os06g02640OsAffx.27423.1.S1_at11/116+936167..939109hypothetical protein
LOC_Os06g02650Os.39915.1.A1_s_at11/116+940733..945388expressed protein
LOC_Os06g02650OsAffx.8785.1.S1_at2/116+940733..945388expressed protein
LOC_Os06g02650Os.32597.1.S1_x_at1/116+940733..945388expressed protein
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02690OsAffx.27425.1.S1_at11/116+962221..962906hypothetical protein
LOC_Os06g02700OsAffx.2147.1.S1_at2/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_x_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.30486.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8785.1.S1_at--986--7531Chr06:940507..940531 (25 bp)
GGGCCTACCCGAAAGTGATGAGGTA
NONE
OsAffx.8785.1.S1_at--1133--6291Chr06:940523..940547 (25 bp)
GATGAGGTATTATGCCCGTTAGAGA
NONE
OsAffx.8785.1.S1_at--256--10133Chr06:940533..940557 (25 bp)
TATGCCCGTTAGAGATAAGCGATCC
NONE
OsAffx.8785.1.S1_at--629--351Chr06:940547..940571 (25 bp)
ATAAGCGATCCCGTTGTAGTGTTTA
NONE
OsAffx.8785.1.S1_at--278--4631Chr06:940551..940575 (25 bp)
GCGATCCCGTTGTAGTGTTTATAAA
NONE
OsAffx.8785.1.S1_at--951--2111Chr06:940590..940614 (25 bp)
ACATGGTATCATACGATCAGTCCCC
NONE
OsAffx.8785.1.S1_at--744--291Chr06:940620..940644 (25 bp)
ATACCTCGGAAACGCCAGAACTTCT
NONE
OsAffx.8785.1.S1_at--141--4171Chr06:940632..940656 (25 bp)
CGCCAGAACTTCTCACGTTGCTGAT
NONE
OsAffx.8785.1.S1_at--833--5651Chr06:940680..940700 (21 bp)
GACTAGAGTTAATGAAACAGGCCAT
NONE
OsAffx.8785.1.S1_at--555--6551Chr06:940747..940771 (25 bp)
GATTATCAACAAGTCATGGGCTGTG
LOC_Os06g02650
OsAffx.8785.1.S1_at--337--9712Chr06:940752..940776 (25 bp)
TCAACAAGTCATGGGCTGTGGGTAA
LOC_Os06g02650
Target Sequence 
GGGCCTACCCGAAAGTGATGAGGTATTATGCCCGTTAGAGATAAGCGATCCCGTTGTAGTGTTTATAAACCCTGATCGAG
ATGACATGGTATCATACGATCAGTCCCCCTTAAATACCTCGGAAACGCCAGAACTTCTCACGTTGCTGATAACGTACGTT
CAGAGCGCATGGGGACTAGAGTTAATGAAACAGGCCATGACGAAATTGATGATTATCAACAAGTCATGGGCTGTGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis