Browse Element(s) Details


OsAffx.9217.1.S1_x_at

Description gb:NM_192380.1
DB_XREF= gi:34911843
GEN=OJ1159_D09.30
TID=OsAffx.9217.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) MAP kinase-like protein (OJ1159_D09.30), mRNA.
PROD=MAP kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g495202/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49490OsAffx.22947.1.S1_x_at8/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.2.S1_x_at4/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.3.S1_x_at2/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49490OsAffx.22947.5.S1_x_at1/112+30236532..30242891retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g49500NANA2+30248718..30250587hypothetical protein
LOC_Os02g49510Os.52768.1.S1_at9/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.18333.1.S1_at6/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49510OsAffx.22086.1.S1_x_at2/112+30253710..30257580amino acid transporter family protein, putative, expressed
LOC_Os02g49520Os.50290.1.S1_at11/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.9217.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49520OsAffx.21372.1.S1_x_at2/112+30260856..30266030U-box domain containing protein, expressed
LOC_Os02g49530Os.11268.1.S1_at11/112+30270583..30273419expressed protein
LOC_Os02g49540OsAffx.3011.1.S1_at11/112+30275432..30275795hypothetical protein
LOC_Os02g49550OsAffx.3012.1.S1_at11/112+30276615..30277550Zinc finger, C3HC4 type family protein
LOC_Os02g49560OsAffx.12566.1.S1_at11/112+30289740..30290249bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9217.1.S1_x_at--17--9952Chr04:22560306..22560330 (25 bp)
TACCACCGTGGTGAACAAAGAAGGC
NONE
OsAffx.9217.1.S1_x_at--242--1473Chr02:30264546..30264569 (24 bp)
AGAAGGCCACGTCCTCACGTCCAAG
LOC_Os02g49520
OsAffx.9217.1.S1_x_at--723--1893Chr02:30264553..30264709 (25 bp)
ACGTCCTCACGTCCAAGGAGAACCA
LOC_Os02g49520
OsAffx.9217.1.S1_x_at--173--9231Chr01:26653387..26653411 (25 bp)
TCCATCGTGGAGCTCCCGAACGGAA
NONE
OsAffx.9217.1.S1_x_at--998--4771Chr01:26653376..26653400 (25 bp)
GCTCCCGAACGGAAGCGCTCGACGT
NONE
OsAffx.9217.1.S1_x_at--444--3792Chr04:22560062..22560086 (25 bp)
CTCGTCACCTGTCAATGCACATGGG
NONE
OsAffx.9217.1.S1_x_at--780--8772Chr04:22559890..22559914 (25 bp)
TGTTTGCTCCGGGACCATAGTGCGT
NONE
OsAffx.9217.1.S1_x_at--673--8052Chr04:22559879..22559903 (25 bp)
GGACCATAGTGCGTCGGGCGGCGTC
NONE
OsAffx.9217.1.S1_x_at--266--3952Chr04:22559842..22559866 (25 bp)
CGGACTGGTGATGAGCAGATGCAAC
NONE
OsAffx.9217.1.S1_x_at--77--8872Chr04:22559834..22559858 (25 bp)
TGATGAGCAGATGCAACAGCTGGAG
NONE
OsAffx.9217.1.S1_x_at--417--3852Chr09:15887671..15887695 (25 bp)
CTGAGTCAGCTGTCACATCAGACAA
NONE
Target Sequence 
TACCACCGTGGTGAACAAAGAAGGCCACGTCCTCACGTCCAAGGAGAACCACCGGGGCCACTCCATCGTGGAGCTCCCGA
ACGGAAGCGCTCGACGTCGCCGCGACGAGGCTGCTCGTCACCTGTCAATGCACATGGGGCACACCATCGCCGAGAGGCTC
TGCAAGACGCAGAGCGCCGCCGGCGCCAGCGAAAGAGGCAGACGAGGGGCGGAGGGCCGCGCTGCTGCGGGCGGTTTGCG
GTCGTGGGCGGCGGCATGTCAGCGGCGTCGGGCTCCGCGTGCGGGTGTTTGCTCCGGGACCATAGTGCGTCGGGCGGCGT
CGTCGTCTCGCCGCGGACTGGTGATGAGCAGATGCAACAGCTGGAGGTCGGCCGGCGGAGAGCCGCCGCCGCCGCCGCCG
GTGGCAGCTCCTCCCTCGCCGGCCGCTGCCCGCGCCCGCAACGCCCATCTGCTCTCTGCAGCCGCCGTGGAGAGGGGAGG
GGAAGAAGTGGCTGACATGTGGGACCCACGTGGGTCCCACTCTGAGTCAGCTGTCACATCAGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9217.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis