Browse Element(s) Details


OsAffx.9699.2.A1_at

Description gb:NM_183845.1
DB_XREF= gi:34894817
GEN=P0554D10.12
TID=OsAffx.9699.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0554D10.12 (P0554D10.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g380921/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38040Os.14919.1.S1_at3/118+23969189..23974141SWIM zinc finger family protein
LOC_Os08g38050OsAffx.25258.2.S1_x_at1/118+23974680..23977787expressed protein
LOC_Os08g38060Os.17417.1.S1_at11/118+23980164..23981409Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38070Os.56255.1.S1_x_at4/118+23984406..23985838hypothetical protein
LOC_Os08g38070OsAffx.23361.2.S1_x_at2/118+23984406..23985838hypothetical protein
LOC_Os08g38070Os.56255.1.S1_at1/118+23984406..23985838hypothetical protein
LOC_Os08g38080OsAffx.17392.2.S1_at11/118+23989017..23991063Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g38086Os.23415.1.A1_s_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38086Os.10056.1.S1_at11/118+23989997..23996645heat-shock protein, putative, expressed
LOC_Os08g38092Os.56236.1.S1_at11/118+23997086..24001873expressed protein
LOC_Os08g38092OsAffx.9699.2.A1_at1/118+23997086..24001873expressed protein
LOC_Os08g38100OsAffx.6063.1.S1_at11/118+24004427..24005539expressed protein
LOC_Os08g38110NANA8+24010387..24011853UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os08g38120OsAffx.17399.3.S1_at11/118+24023969..24024706expressed protein
LOC_Os08g38130OsAffx.29583.2.S1_x_at11/118+24025733..24027009Cytokinin-O-glucosyltransferase 3, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9699.2.A1_at--80--5731NONE
GACGGTCGATAGAGCCAGTTACCAA
NONE
OsAffx.9699.2.A1_at--396--56320Chr12:2982052..2982072 (21 bp)
GACACATCGCCAAGCAAAACGGTTA
NONE
OsAffx.9699.2.A1_at--549--2373Chr01:12674241..12674261 (21 bp)
AAACGGTTATATTAGCTAGTCGAGA
NONE
OsAffx.9699.2.A1_at--312--9211Chr01:12674264..12674288 (25 bp)
TCGAATCATTTCACTCAACTAACTT
NONE
OsAffx.9699.2.A1_at--420--19518Chr12:2982405..2982429 (25 bp)
ACTTTGGTCCTACAATTGATCGTCG
NONE
OsAffx.9699.2.A1_at--858--25715Chr12:2982443..2982467 (25 bp)
AACGGTGTTGTGCTCATAACCTCTG
NONE
OsAffx.9699.2.A1_at--930--72920Chr12:2982452..2982476 (25 bp)
GTGCTCATAACCTCTGCCAAAGTAG
NONE
OsAffx.9699.2.A1_at--192--7178Chr12:2982480..2982503 (24 bp)
GTCTCTTTCGAACCACATTGTACAA
NONE
OsAffx.9699.2.A1_at--130--511Chr01:12675538..12675562 (25 bp)
ATCGTGTGCTACCTTCGTGTTCCTT
NONE
OsAffx.9699.2.A1_at--427--4251Chr01:12675664..12675688 (25 bp)
CCGGTGTCGGGCACGAGCTTGACAA
NONE
OsAffx.9699.2.A1_at--139--5631NONE
GACAGACGAGGGAGAGGCCACCACC
NONE
Target Sequence 
GACGGTCGATAGAGCCAGTTACCAAAAATATCTTTTGCATTATGGGGAGGGGGATATTGAAGGCAAAGAAGACACATCGC
CAAGCAAAACGGTTATATTAGCTAGTCGAGAAATCGAATCATTTCACTCAACTAACTTTGGTCCTACAATTGATCGTCGG
AATGAAACATTCAACGGTGTTGTGCTCATAACCTCTGCCAAAGTAGAATGTCTCTTTCGAACCACATTGTACAAAGAAGG
GGTGCATGGCATCTATGTCAGGGCAGGAGCCCATCGTGTGCTACCTTCGTGTTCCTTCCCGTGTTTCTCCTTTGTGCATC
CGCCTGCCCACATCGTTGCTAGCCCCTCCATCCCCACCGAGCGTCCTCGGCCTACAGGCCCTTGGGCTATTGCCGCCACC
GGTGTCGGGCACGAGCTTGACAAGGTGGTCGTGCTTGCCAGCCTCTTTGAAGATGATGACGGCGATGATAAACAAGACAG
ACGAGGGAGAGGCCACCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9699.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis