Browse Element(s) Details


OsAffx.9884.1.S1_at

Description tigr:9629.m01278
TID=OsAffx.9884.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1307010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein
LOC_Os01g13100Os.16996.1.S1_at10/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13100OsAffx.8592.1.S1_at1/111+7284709..7291038KH domain containing protein, expressed
LOC_Os01g13120OsAffx.9883.1.S1_x_at11/111+7294484..7295547MIP family channel proteins containing protein, expressed
LOC_Os01g13130Os.52849.1.S1_x_at11/111+7299199..7300573Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9884.1.S1_at--1068--4231Chr01:7273708..7273732 (25 bp)
CCGTGAACGCGCAGACCAGCGGCGA
LOC_Os01g13070
OsAffx.9884.1.S1_at--441--5871Chr01:7273866..7273890 (25 bp)
GAGCCCGAGAGGGACACGTCGCCAT
LOC_Os01g13070
OsAffx.9884.1.S1_at--8--4911Chr01:7273916..7273940 (25 bp)
GCTTCTCAAGCGCACAAGACAAGGC
LOC_Os01g13070
OsAffx.9884.1.S1_at--544--931Chr01:7273937..7274102 (25 bp)
AGGCACGATAACAGTGATCATCAAG
LOC_Os01g13070
OsAffx.9884.1.S1_at--457--9731Chr01:7274098..7274122 (25 bp)
TCAAGATGAGGAGCGCGCATATGGC
LOC_Os01g13070
OsAffx.9884.1.S1_at--911--271Chr01:7274116..7274140 (25 bp)
ATATGGCCGGCACCTTCATCAAGAC
LOC_Os01g13070
OsAffx.9884.1.S1_at--726--211NONE
ATTTGTTGTGCTTGACATCTGCTCG
NONE
OsAffx.9884.1.S1_at--808--6451Chr01:7274650..7274674 (25 bp)
GATACTTCGGGATCAAGACGGTGGA
LOC_Os01g13070
OsAffx.9884.1.S1_at--400--511Chr01:7274682..7274706 (25 bp)
ATCGAGTTCGAGTGCAGGAGCAAAT
LOC_Os01g13070
OsAffx.9884.1.S1_at--1154--291Chr01:7274705..7274729 (25 bp)
ATACGAGCAGCACAAGTGGGTTCAA
LOC_Os01g13070
OsAffx.9884.1.S1_at--601--2851Chr01:7274718..7274742 (25 bp)
AAGTGGGTTCAAGGGATCACCGAGA
LOC_Os01g13070
Target Sequence 
CCGTGAACGCGCAGACCAGCGGCGACATCATGGCGCTCACCGCCGGCGCCGCCACGGCCCTGCGCGGGGCGGCGATGCTG
CGGGCGAGGCTCCACAAGGAGATCCAGGCCGCCGCCCTCCCCGGCGGCGGCGCCGGCGCCGGCGACATCAGCGGCAGGGA
GCCCGAGAGGGACACGTCGCCATTCGCCTTCGTCTCCAGAGGCGGCGAGCTTCTCAAGCGCACAAGACAAGGCACGATAA
CAGTGATCATCAAGATGAGGAGCGCGCATATGGCCGGCACCTTCATCAAGACCAAGAAATTTGTTGTGCTTGACATCTGC
TCGGAGATCCCGGCGTGGGCGGGGAGGGAGGTGGAGGAGGGGAGCCACAGGAGGGGATACTTCGGGATCAAGACGGTGGA
GAGGATGATCGAGTTCGAGTGCAGGAGCAAATACGAGCAGCACAAGTGGGTTCAAGGGATCACCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis