Browse Element(s) Details


Os.10059.2.S1_at

Description gb:AK111375.1
DB_XREF= gi:32996584
TID=Os.10059.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A10, full insert sequence.
FL= gb:AK111375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3461410/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10059.2.S1_at--636--2791Chr10:18122687..18122711 (25 bp)
AAGAGGTTCATCCACTTGATTCCCG
LOC_Os10g34614
Os.10059.2.S1_at--1000--571Chr10:18122696..18122720 (25 bp)
ATCCACTTGATTCCCGTTATTCATT
LOC_Os10g34614
Os.10059.2.S1_at--481--6791Chr10:18122740..18122764 (25 bp)
GTTATGTATGTCCTTACTTGGTGCT
LOC_Os10g34614
Os.10059.2.S1_at--509--2071Chr10:18122755..18122779 (25 bp)
ACTTGGTGCTATCTCTTGGTAAAAA
LOC_Os10g34614
Os.10059.2.S1_at--770--3111Chr10:18122782..18122806 (25 bp)
AATATTATTACTGCCCTTGTTTCTC
LOC_Os10g34614
Os.10059.2.S1_at--578--10791Chr10:18122798..18122822 (25 bp)
TTGTTTCTCCAGATCAAATGACACT
LOC_Os10g34614
Os.10059.2.S1_at--201--3011NONE
AATGACACTAGTTACCCCATGTAGG
NONE
Os.10059.2.S1_at--771--10231Chr10:18122841..18122865 (25 bp)
TATTGGTTACCACCTTAATAGGCTT
LOC_Os10g34614
Os.10059.2.S1_at--893--6871Chr10:18122910..18122934 (25 bp)
GTATTTCCTTTATATTGCCATTGCC
LOC_Os10g34614
Os.10059.2.S1_at--928--3591Chr10:18122928..18122952 (25 bp)
CATTGCCGTGGTGCCTAGGTGAAGA
LOC_Os10g34614
Os.10059.2.S1_at--118--2571Chr10:18122952..18122976 (25 bp)
AACTGTCACGTTCATTACATATCTG
LOC_Os10g34614
Target Sequence 
AAGAGGTTCATCCACTTGATTCCCGTTATTCATTAATCATCATTACCATCTAAGTTATGTATGTCCTTACTTGGTGCTAT
CTCTTGGTAAAAAAAAAATATTATTACTGCCCTTGTTTCTCCAGATCAAATGACACTAGTTACCCCATGTAGGTTTATTG
GTTACCACCTTAATAGGCTTTTAGAAGATACGGAGTAGTGTATTATACATGGTGACCATGTTCCGTATTTCCTTTATATT
GCCATTGCCGTGGTGCCTAGGTGAAGAACTGTCACGTTCATTACATATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10059.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis