Browse Element(s) Details


Os.10438.1.S1_at

Description gb:AK121176.1
DB_XREF= gi:37990799
TID=Os.10438.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083C18, full insert sequence.
FL= gb:AK121176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0208011/11Rickettsia 17 kDa surface antigen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02040OsAffx.5678.1.S1_x_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02040Os.53314.1.S1_at11/118+652201..655244pentatricopeptide, putative, expressed
LOC_Os08g02050Os.14853.1.S1_at10/118+655822..661212protein kinase family protein, putative, expressed
LOC_Os08g02060Os.5714.1.S1_at10/118+664913..668380expressed protein
LOC_Os08g02060OsAffx.28871.1.S1_at1/118+664913..668380expressed protein
LOC_Os08g02070Os.4174.1.S1_at10/118+673011..675392Agamous-like MADS box protein AGL12, putative, expressed
LOC_Os08g02080Os.10438.1.S1_at11/118+676235..677788Rickettsia 17 kDa surface antigen family protein, expressed
LOC_Os08g02094OsAffx.5679.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.52874.1.S1_at11/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02094Os.48426.1.A1_at1/118+679941..687533GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os08g02110Os.52833.1.S1_at11/118+690833..692229Peroxidase 47 precursor, putative, expressed
LOC_Os08g02120Os.12780.1.S1_at11/118+694902..697658Fructokinase, putative, expressed
LOC_Os08g02130Os.6320.1.S1_at10/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130Os.54405.1.S1_at2/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.21108.1.S1_x_at1/118+698212..707503RNA recognition motif family protein, expressed
LOC_Os08g02130OsAffx.8723.1.S1_at1/118+698212..707503RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10438.1.S1_at--753--6971Chr08:677151..677175 (25 bp)
GTACCAGCTCTACAAGACGGACAAG
LOC_Os08g02080
Os.10438.1.S1_at--316--4291Chr08:677115..677139 (25 bp)
CCTAAGGTTCATCTACTGGTGGGAG
LOC_Os08g02080
Os.10438.1.S1_at--837--8891Chr08:676588..676612 (25 bp)
TGAGTGGTGTCTATCTGGTCCAGCA
LOC_Os08g02080
Os.10438.1.S1_at--262--4211Chr08:676543..676567 (25 bp)
CCCCGCTGGGATTTTTAGTTGCTCA
LOC_Os08g02080
Os.10438.1.S1_at--1120--10351Chr08:676531..676555 (25 bp)
TTTTAGTTGCTCATTCCTAGTATTT
LOC_Os08g02080
Os.10438.1.S1_at--1130--10211Chr08:676492..676516 (25 bp)
TATTGGTTGTGACGATTACGCAGAT
LOC_Os08g02080
Os.10438.1.S1_at--758--10291Chr08:676459..676483 (25 bp)
TTTCCTTTTGCTAGTACCGTGAGCT
LOC_Os08g02080
Os.10438.1.S1_at--514--5291Chr08:676396..676420 (25 bp)
GAATGGTTCACAAACTAAATGCTGA
LOC_Os08g02080
Os.10438.1.S1_at--582--431Chr08:676372..676396 (25 bp)
ATCTTTACCGGTATCTGTTGATCTT
LOC_Os08g02080
Os.10438.1.S1_at--268--6911Chr08:676362..676386 (25 bp)
GTATCTGTTGATCTTTGTCCATTAA
LOC_Os08g02080
Os.10438.1.S1_at--297--7071Chr08:676320..676344 (25 bp)
GTAAGTACTGCTTTACCTTGAAGAT
LOC_Os08g02080
Target Sequence 
GTACCAGCTCTACAAGACGGACAAGCAGGGGGCCAACCTAAGGTTCATCTACTGGTGGGAGGACAAGGTCGCAGGAAACC
AGAAAAGTTGAGTGGTGTCTATCTGGTCCAGCAGCTTGGCAAGAGTGATGTCCCCCCGCTGGGATTTTTAGTTGCTCATT
CCTAGTATTTCCAAATAAGGTGTGTATTGGTTGTGACGATTACGCAGATGGAGTATGTTTCCTTTTGCTAGTACCGTGAG
CTCTGTCTGTTCACAGCCTGAACAACAACTTTTGTGCTCTGAATGGTTCACAAACTAAATGCTGATCTTTACCGGTATCT
GTTGATCTTTGTCCATTAAAGATTACTTTGCATATTGTAAGTACTGCTTTACCTTGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis