Browse Element(s) Details


Os.10543.1.S1_at

Description gb:CB622473
DB_XREF= gi:29617461
DB_XREF=OSIIEa09D14.r
CLONE=OSIIEa09D14
TID=Os.10543.1
CNT=13
FEA=EST
TIER=Stack
STK=10
UG=Os.10543 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181404.1 (A.thaliana) mevalonate diphosphate decarboxylase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0192011/11diphosphomevalonate decarboxylase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008610biological_processlipid biosynthesis
GO:0004163molecular_functiondiphosphomevalonate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10543.1.S1_at--817--6671Chr02:497328..497352 (25 bp)
GTTGCTTACACCTTCGATGCTGGGC
LOC_Os02g01920
Os.10543.1.S1_at--683--611Chr02:497312..497336 (25 bp)
ATGCTGGGCCCAATGCTGTCCTAAT
LOC_Os02g01920
Os.10543.1.S1_at--490--2291Chr02:497272..497296 (25 bp)
AAATGCAACCATTCTCCTTCAGAAG
LOC_Os02g01920
Os.10543.1.S1_at--976--5391Chr02:497251..497275 (25 bp)
GAAGCTCTTGTATTATTTCCCTCCT
LOC_Os02g01920
Os.10543.1.S1_at--537--451Chr02:497144..497240 (25 bp)
ATCTCAGCAGCTATATGGTTGGCGA
LOC_Os02g01920
Os.10543.1.S1_at--817--6491Chr02:497086..497110 (25 bp)
GATAGAAGATGTGGAGGCCCTCCCA
LOC_Os02g01920
Os.10543.1.S1_at--553--2051Chr02:497009..497033 (25 bp)
ACTTCATCTGTAGCAGGCTTGGAGC
LOC_Os02g01920
Os.10543.1.S1_at--638--5891Chr02:496988..497012 (25 bp)
GAGCTGGCCCAAAAGTTGTCACTGA
LOC_Os02g01920
Os.10543.1.S1_at--757--4451Chr02:496958..496982 (25 bp)
GCCTAGCATTGATCGATTCGGTCAC
LOC_Os02g01920
Os.10543.1.S1_at--710--10771Chr02:496856..496880 (25 bp)
TTGTAGGGTCATAAACTCGGCTTTG
LOC_Os02g01920
Os.10543.1.S1_at--835--10751Chr02:496809..496833 (25 bp)
TTGACACTGGCTGTTATTGCTGCTC
LOC_Os02g01920
Target Sequence 
GTTGCTTACACCTTCGATGCTGGGCCCAATGCTGTCCTAATCGCACCAAACCGCAAAAATGCAACCATTCTCCTTCAGAA
GCTCTTGTATTATTTCCCTCCTCAAGATAATGATCTCAGCAGCTATATGGTTGGCGACAAGTCGATTCTAAGCGATGCTG
GACTGAAATCGATAGAAGATGTGGAGGCCCTCCCAGNTCCTGCCGAGACGAAGATGCCGAGCCAAAAATTCAAGGGAGAT
GTGAGCTACTTCATCTGTAGCAGGCTTGGAGCTGGCCCAAAAGTTGTCACTGACGAAAGCCTAGCATTGATCGATTCGGT
CACGGGGCTCCCCAAGGGAGTGTAGCTGAAACTATGTCATTCGGAGAGTTTGTACTGAGAGCGCAAAGCGAATTCAACTT
TTGTAGGGTCATAAACTCGGCTTTGATGATGTAATATTTTTCTCNCCGTTGACACTGGCTGTTATTGCTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis