Browse Element(s) Details


Os.10619.1.S2_at

Description gb:AK100082.1
DB_XREF= gi:32985291
TID=Os.10619.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002E24, full insert sequence.
FL= gb:AK100082.1 gb:AK072881.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g447706/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44720OsAffx.828.1.S1_x_at6/115+25914753..25916504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.447.1.S1_at7/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730OsAffx.22947.2.S1_x_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44730Os.52609.1.S1_at1/115+25919056..25923606retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44740OsAffx.828.1.S1_x_at6/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20017.1.S1_at5/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740Os.33601.3.S1_x_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.2.S1_at3/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.20631.1.S1_x_at2/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44740OsAffx.12505.1.S1_x_at1/115+25924467..25930439transposon protein, putative, Mutator sub-class
LOC_Os05g44750NANA5+25931406..25931809hypothetical protein
LOC_Os05g44760Os.3293.1.S1_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44760Os.20973.1.S1_s_at11/115+25934125..25939061Hexokinase 1, putative, expressed
LOC_Os05g44770Os.10619.1.S1_at11/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.10619.1.S2_at6/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44770Os.11775.2.S1_x_at1/115+25939268..25942512Leucine Rich Repeat family protein, expressed
LOC_Os05g44780Os.53939.1.S1_at11/115+25944983..25948154expressed protein
LOC_Os05g44786OsAffx.31479.4.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44786OsAffx.31479.1.S1_x_at9/115+25951871..25957958AT hook motif-containing protein, putative
LOC_Os05g44792OsAffx.31479.5.S1_x_at9/115+25959745..25966219hypothetical protein
LOC_Os05g44792Os.49246.1.S1_x_at1/115+25959745..25966219hypothetical protein
LOC_Os05g44800Os.50163.1.S1_at11/115+25966667..25969496expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10619.1.S2_at--958--6751Chr05:25939484..25939508 (25 bp)
GTTCAAGCTCGGCATCATCTGCACC
LOC_Os05g44770
Os.10619.1.S2_at--548--8851Chr05:25939431..25939455 (25 bp)
TGAGGGACGTTCTGCAGATTCTGGT
LOC_Os05g44770
Os.10619.1.S2_at--256--1531Chr05:25939398..25939422 (25 bp)
AGCAGGCGCTCCAGAACACCGTGGA
LOC_Os05g44770
Os.10619.1.S2_at--592--5071Chr05:25939317..25939341 (25 bp)
GCAGCCGCCGGAAGCAGCTTTCGGA
LOC_Os05g44770
Os.10619.1.S2_at--412--1511Chr05:25939305..25939329 (25 bp)
AGCAGCTTTCGGACACCAAAGGCAT
LOC_Os05g44770
Os.10619.1.S2_at--938--5151Chr05:25939272..25939296 (25 bp)
GCAACGGCAGCTTGGACAGCATAGT
LOC_Os05g44770
Os.10619.1.S2_at--381--2631Chr05:25939220..25939244 (25 bp)
AACCTGATCCAATGGTTACCATCTA
NONE
Os.10619.1.S2_at--61--1311Chr05:25939191..25939215 (25 bp)
AGATGGCACGCTAGTTAGGAGAGCA
NONE
Os.10619.1.S2_at--859--9971Chr05:25939160..25939184 (25 bp)
TACCAGACAAATACATTCGCCATCC
NONE
Os.10619.1.S2_at--325--10651Chr05:25939145..25939169 (25 bp)
TTCGCCATCCTTCAGTTATTTGCAT
NONE
Os.10619.1.S2_at--1033--6011Chr05:25939070..25939094 (25 bp)
GAGAGTGCAGTCACATACATATATG
NONE
Target Sequence 
GTTCAAGCTCGGCATCATCTGCACCGGCGCGCAGCCGGCGACGAGGCCGACNATGAGGGACGTTCTGCAGATTCTGGTGA
GGTGCGAGCAGGCGCTCCAGAACACCGTGGACGGGAAGGTGGCGGAGTACGACGGCGACGGCGCGCCGTTTCTGCCGATC
AGGGGTGGCAGCCGCCGGAAGCAGCTTTCGGACACCAAAGGCATCGACGACGGCAACGGCAGCTTGGACAGCATAGTATG
AGAACAATGGTCAATAAGAAGTATAACCTGATCCAATGGTTACCATCTAGGAGAGATGGCACGCTAGTTAGGAGAGCAGG
TAGATACCAGACAAATACATTCGCCATCCTTCAGTTATTTGCATGTAATGAGTATTGTAACTTTGTAAATGCATCTATAA
AATTTTGGGACAGTGAGAGTGCAGTCACATACATATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10619.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis