Browse Element(s) Details


Os.11039.1.S1_s_at

Description gb:AK063751.1
DB_XREF= gi:32973769
TID=Os.11039.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-G12, full insert sequence.
FL= gb:AK063751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0174011/11Heat shock protein 82, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11039.1.S1_s_at--678--9991Chr04:476374..476398 (25 bp)
TAGACATGAGTCTTACGTAAGTATA
LOC_Os04g01740
Os.11039.1.S1_s_at--311--7151Chr04:476383..476407 (25 bp)
GTCTTACGTAAGTATATGTCGCCAG
LOC_Os04g01740
Os.11039.1.S1_s_at--1135--9931Chr04:476387..476411 (25 bp)
TACGTAAGTATATGTCGCCAGTGTT
LOC_Os04g01740
Os.11039.1.S1_s_at--140--7071Chr04:476390..476414 (25 bp)
GTAAGTATATGTCGCCAGTGTTAGT
LOC_Os04g01740
Os.11039.1.S1_s_at--126--6891Chr04:476394..476418 (25 bp)
GTATATGTCGCCAGTGTTAGTATGT
LOC_Os04g01740
Os.11039.1.S1_s_at--354--271Chr04:476396..476420 (25 bp)
ATATGTCGCCAGTGTTAGTATGTTG
LOC_Os04g01740
Os.11039.1.S1_s_at--407--771Chr04:476398..476422 (25 bp)
ATGTCGCCAGTGTTAGTATGTTGCA
LOC_Os04g01740
Os.11039.1.S1_s_at--574--10271Chr04:476423..476447 (25 bp)
TTTGCGTTACTCATGCGTACATCTT
LOC_Os04g01740
Os.11039.1.S1_s_at--418--9151Chr04:476425..476449 (25 bp)
TGCGTTACTCATGCGTACATCTTTC
LOC_Os04g01740
Os.11039.1.S1_s_at--406--4031Chr04:476427..476451 (25 bp)
CGTTACTCATGCGTACATCTTTCTA
LOC_Os04g01740
Os.11039.1.S1_s_at--765--6771Chr04:476428..476452 (25 bp)
GTTACTCATGCGTACATCTTTCTAA
LOC_Os04g01740
Target Sequence 
TAGACATGAGTCTTACGTAAGTATATGTCGCCAGTGTTAGTATGTTGCATTTGCGTTACTCATGCGTACATCTTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11039.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis