Browse Element(s) Details


Os.11088.1.S1_at

Description gb:AK111917.1
DB_XREF= gi:37988580
TID=Os.11088.1
CNT=30
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135H16, full insert sequence.
FL= gb:AK112021.1 gb:AK111917.1 gb:AK111972.1 gb:AK111946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3863011/11Ras-related protein ARA-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38560OsAffx.27227.1.S1_at11/115+22541931..22542431Histone H2B, putative
LOC_Os05g38560OsAffx.10929.1.S1_x_at1/115+22541931..22542431Histone H2B, putative
LOC_Os05g38570Os.52526.1.S1_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.7480.1.S1_x_at11/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38570Os.52655.2.S1_at1/115+22542483..22545844Riboflavin biosynthesis protein ribA, chloroplast precursor, putative, expressed
LOC_Os05g38580Os.49443.1.S1_at11/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38580Os.18980.1.A1_at1/115+22547125..22549302ribosomal protein L17 containing protein, expressed
LOC_Os05g38590Os.52317.1.S1_at11/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38590Os.17700.1.S1_x_at9/115+22549969..22552940Protein tyrosine phosphatase-like protein, PTPLA containing protein, expressed
LOC_Os05g38600OsAffx.15010.1.S1_at11/115+22555310..22555834Zinc finger, C2H2 type family protein
LOC_Os05g38610Os.3438.1.S1_at10/115+22558442..22561195Clathrin adaptor complex small chain family protein, expressed
LOC_Os05g38620OsAffx.15011.1.S1_at11/115+22565231..22565851Zinc finger, C2H2 type family protein
LOC_Os05g38630Os.11088.1.S1_at11/115+22566108..22569323Ras-related protein ARA-3, putative, expressed
LOC_Os05g38640Os.9745.1.S1_at11/115+22573654..22574824Histone H2A, putative, expressed
LOC_Os05g38650OsAffx.15012.1.S1_x_at11/115+22578592..22579023hypothetical protein
LOC_Os05g38660Os.55283.1.S1_at11/115+22582154..22582816expressed protein
LOC_Os05g38670OsAffx.15013.1.S1_at11/115+22587742..22591452cation efflux family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009873biological_processethylene mediated signaling pathway
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11088.1.S1_at--369--7051Chr05:22566858..22567015 (25 bp)
GTAAAAGGGCTGTCCCTACTGCGAA
LOC_Os05g38630
Os.11088.1.S1_at--470--10371Chr05:22566646..22566670 (25 bp)
TTTTTTCTCCATTGCACGTGACATT
LOC_Os05g38630
Os.11088.1.S1_at--181--1331Chr05:22566617..22566641 (25 bp)
AGAGGCTTGCTGAGACCGACTCCAA
LOC_Os05g38630
Os.11088.1.S1_at--1004--6431Chr05:22566472..22566496 (25 bp)
GATCAGGGTGCCGACAAACCAGCAG
LOC_Os05g38630
Os.11088.1.S1_at--820--3771Chr05:22566403..22566427 (25 bp)
CTCGGCCTCCATCGTTTATTATTTG
LOC_Os05g38630
Os.11088.1.S1_at--310--8811Chr05:22566370..22566394 (25 bp)
TGTTCCCTGTCTTGCTGTTATAGGA
LOC_Os05g38630
Os.11088.1.S1_at--64--6491Chr05:22566322..22566346 (25 bp)
GATACGGATCTGGTTGTACCTATCT
LOC_Os05g38630
Os.11088.1.S1_at--232--1751Chr05:22566305..22566329 (25 bp)
ACCTATCTTTGCTTCCATTCTTTGA
LOC_Os05g38630
Os.11088.1.S1_at--173--10771Chr05:22566263..22566287 (25 bp)
TTGACGTAGCTGTTGCAATTGCCTG
LOC_Os05g38630
Os.11088.1.S1_at--576--4851Chr05:22566234..22566258 (25 bp)
GCTACTACTGTACGCTGGATTTCAA
LOC_Os05g38630
Os.11088.1.S1_at--361--7051Chr05:22566184..22566208 (25 bp)
GTAACGTAGTCCATGCTGTATTGCT
LOC_Os05g38630
Target Sequence 
GTAAAAGGGCTGTCCCTACTGCGAAAGGCCAAGCACTGGCTGATGAGTATGGCATCAAATTTTTCGAAACTAGTGCGAAG
ACAAACCTCAACGTGGAGCAAGTTTTTTTCTCCATTGCACGTGACATTAAGCAGAGGCTTGCTGAGACCGACTCCAAGCC
TGAGGACAAGACAATCAAGATTAACAACAAGACGGATCAGGGTGCCGACAAACCAGCAGCTTCTGGATCTGCATGCTGCG
GCTCCTGAGGAGACGTTCGCCTTCTCGGCCTCCATCGTTTATTATTTGACATTGTTTGTTCCCTGTCTTGCTGTTATAGG
AAGAATGTCAAGAAGACACACTATGATACGGATCTGGTTGTACCTATCTTTGCTTCCATTCTTTGAAGCAACTACTCATG
CTTTTGACGTAGCTGTTGCAATTGCCTGGGGGGCTACTACTGTACGCTGGATTTCAATCCGTTGAACTGCAAGCTACAGT
GTGTAACGTAGTCCATGCTGTATTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis