Browse Element(s) Details


Os.11878.1.S1_at

Description gb:AK065183.1
DB_XREF= gi:32975201
TID=Os.11878.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002D21, full insert sequence.
FL= gb:AK065183.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2191411/11expressed protein
LOC_Os03g506206/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21870Os.16113.1.S1_s_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21870OsAffx.3291.1.S1_at11/113+12488364..12489497uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os03g21880Os.55381.1.S1_at11/113+12493855..12494396expressed protein
LOC_Os03g21890OsAffx.3292.1.S1_s_at11/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21890Os.51936.1.S1_at1/113+12503309..12507647Potassium transporter 2, putative, expressed
LOC_Os03g21900Os.10800.1.S1_at11/113+12507923..12511517Uroporphyrinogen decarboxylase, chloroplast precursor, putative, expressed
LOC_Os03g21914Os.11878.1.S1_at11/113+12512486..12519049expressed protein
LOC_Os03g21914Os.8844.1.S1_at1/113+12512486..12519049expressed protein
LOC_Os03g21930NANA3+12519411..12519737hypothetical protein
LOC_Os03g21940Os.4699.1.S1_at11/113+12521018..1252352560S ribosomal protein L19-1, putative, expressed
LOC_Os03g21950Os.6783.1.S1_s_at11/113+12524813..12531017Fumarate hydratase 1, mitochondrial precursor, putative, expressed
LOC_Os03g21960Os.50487.1.S1_at11/113+12535682..12538535Alanine-glyoxylate aminotransferase 2 homolog 3, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11878.1.S1_at--632--472Chr03:28853057..28853081 (25 bp)
ATCTGAATCCAGAGGCGCAGGTTCT
LOC_Os03g50620
Os.11878.1.S1_at--965--7892Chr03:28853076..28853100 (25 bp)
GGTTCTCTTGTCACAGCTGAACCGA
LOC_Os03g50620
Os.11878.1.S1_at--1020--1592Chr03:28853090..28853114 (25 bp)
AGCTGAACCGACAGATGGCACCCAA
LOC_Os03g50620
Os.11878.1.S1_at--1059--1532Chr03:28855505..28855529 (25 bp)
AGCATTCAGTATGTGCTGTCGCACA
LOC_Os03g50620
Os.11878.1.S1_at--500--5011Chr03:12512674..12512698 (25 bp)
GCAGGATTACAATGCTGTTTCCGTA
LOC_Os03g21914
Os.11878.1.S1_at--775--5151Chr03:12512613..12512637 (25 bp)
GCAACCTCCTGTATATCAAGCCGTA
LOC_Os03g21914
Os.11878.1.S1_at--406--3251Chr03:12512597..12512621 (25 bp)
CAAGCCGTACGTTTTCTGTGTAATC
LOC_Os03g21914
Os.11878.1.S1_at--436--8732Chr03:28856018..28856042 (25 bp)
TGTAATCGGTTGACTGGTTGGCATT
LOC_Os03g50620
Os.11878.1.S1_at--48--7932Chr03:28856033..28856057 (25 bp)
GGTTGGCATTAACAAGCTGCTGCTT
LOC_Os03g50620
Os.11878.1.S1_at--28--731Chr03:12512518..12512542 (25 bp)
ATGATTTCATACACGGTACCCGGAT
LOC_Os03g21914
Os.11878.1.S1_at--302--6991Chr03:12512503..12512527 (25 bp)
GTACCCGGATGTCTGTTTTCTCTGC
LOC_Os03g21914
Target Sequence 
ATCTGAATCCAGAGGCGCAGGTTCTCTTGTCACAGCTGAACCGACAGATGGCACCCAANTTTGGCAAGNTAAACAAATCN
TTAGCTGAACTGGTTGATGATTACAGCATGGTGAATTTCATCCCACTTGANTTAAGAAAAGAGAGCAGCATTCAGTATGT
GCTGTCGCACATCGACANCTGCATCCAGTATGGGGNAGACGCAGATGTGAAGGTTAGGGACTTCGATCCCGAGGANNNCT
AATCATTTGATCGCGTANGANCTANNNAAAANTACTATNGCAGCATTNNNNNNNNANNNNNNNNNNTNNGNNTNNATANT
ANTNNAGTAGGAGTATGCAGAAAGCATCGCAGGATTACAATGCTGTTTCCGTANGAGTCCTATCGGTTGATCAACAAGAT
AGAATATCTGCAACCTCCTGTATATCAAGCCGTACGTTTTCTGTGTAATCGGTTGACTGGTTGGCATTAACAAGCTGCTG
CTTGCCAAAAAAAAAAANNTCTGAATGATTTCATACACGGTACCCGGATGTCTGTTTTCTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis