Browse Element(s) Details

Os.12166.1.S1_at

Description

gb:AK060429.1
DB_XREF= gi:32970447
TID=Os.12166.1
CNT=27
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013118A14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A07, full insert sequence.
FL= gb:AK099019.1 gb:AK060429.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g11620	11/11	Polyadenylate-binding protein 2, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g11570	Os.14919.1.S1_at	7/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11570	Os.56216.1.S1_at	2/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11570	OsAffx.29313.1.S1_at	1/11	6	+	6130904..6136479	SWIM zinc finger family protein
LOC_Os06g11580	OsAffx.27568.1.S1_at	11/11	6	+	6140611..6141770	hypothetical protein
LOC_Os06g11590	OsAffx.4800.1.S1_at	11/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11590	Os.4714.2.S1_x_at	1/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11590	Os.4714.2.S1_at	1/11	6	+	6143587..6144405	expressed protein
LOC_Os06g11600	OsAffx.15372.1.S1_x_at	11/11	6	+	6145722..6150197	Plant protein family protein, expressed
LOC_Os06g11600	Os.47251.1.S1_at	8/11	6	+	6145722..6150197	Plant protein family protein, expressed
LOC_Os06g11610	Os.12234.2.S1_s_at	11/11	6	+	6151031..6152439	Hsp20/alpha crystallin family protein, expressed
LOC_Os06g11620	Os.12166.1.S1_at	11/11	6	+	6154941..6158887	Polyadenylate-binding protein 2, putative, expressed
LOC_Os06g11630	Os.22584.1.S1_at	10/11	6	+	6159331..6162652	F-box family protein, putative, expressed
LOC_Os06g11640	Os.49227.1.S1_at	11/11	6	+	6170590..6175330	Phosphotyrosyl phosphate activator protein, expressed
LOC_Os06g11650	Os.50807.1.S1_at	9/11	6	+	6176897..6178164	Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os06g11660	Os.37006.1.S1_at	6/11	6	+	6179336..6180477	Phosphate-induced protein 1 conserved region containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0003723	molecular_function	RNA binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.12166.1.S1_at--375--771	1	Chr06:6158121..6158145 (25 bp)	GGGTGACAATCCTGACAGACAAGTT	LOC_Os06g11620
Os.12166.1.S1_at--197--685	1	Chr06:6158160..6158184 (25 bp)	GTTTCGCTTATGTTGAATTCCTTGA	LOC_Os06g11620
Os.12166.1.S1_at--761--657	1	Chr06:6158407..6158431 (25 bp)	GATTCGGTGGTCATCCTTATATGAG	LOC_Os06g11620
Os.12166.1.S1_at--192--27	1	Chr06:6158425..6158449 (25 bp)	ATATGAGGCCATATGGAGCACCATT	LOC_Os06g11620
Os.12166.1.S1_at--994--805	1	Chr06:6158439..6158463 (25 bp)	GGAGCACCATTTTACAATCCCTATG	LOC_Os06g11620
Os.12166.1.S1_at--1143--857	1	Chr06:6158462..6158593 (25 bp)	TGGTTATGGATACCCCAGATTCCGC	LOC_Os06g11620
Os.12166.1.S1_at--662--541	1	Chr06:6158616..6158640 (25 bp)	GAAGCTGTCTTCGTGGAGTCTTCAG	LOC_Os06g11620
Os.12166.1.S1_at--837--963	1	Chr06:6158773..6158797 (25 bp)	TCAGGCAGCAGCATTATGTACTATT	LOC_Os06g11620
Os.12166.1.S1_at--429--729	1	Chr06:6158816..6158840 (25 bp)	GTGCGCACTATTTTGGGTTTTGGCT	LOC_Os06g11620
Os.12166.1.S1_at--765--833	1	Chr06:6158837..6158861 (25 bp)	GGCTGCATTTTTGGTTTCCATCTTT	LOC_Os06g11620
Os.12166.1.S1_at--566--787	1	Chr06:6158849..6158873 (25 bp)	GGTTTCCATCTTTTCAATTCAATTA	LOC_Os06g11620

Target Sequence

GGGTGACAATCCTGACAGACAAGTTTGGGCAACCAAAAGGTTTCGCTTATGTTGAATTCCTTGAAGTAGAAGCTGTTCAG
GAAGCTGTTAAGTTGAACGAATCAGAACTGCATGGTCGCCAAATCAAGGTGGCGCCAAAGAGGACTAACGTCCCTGGGAT
GAAGCAGCCCCGCGGAGGCAGAGGATTCGGTGGTCATCCTTATATGAGGCCATATGGAGCACCATTTTACAATCCCTATG
GTTATGGATACCCCAGATTCCGCCGTCCACGCAGGCCATACTTTTGAAGCTGTCTTCGTGGAGTCTTCAGCACATGACAT
TAGTCCAATAGCCCAAAGAATCCGTCGTTGTTGCTGTATTTCGATACTTCATAGTTAGCAACTATAAAGTTCGATCACTT
TCTTCACAGGGTGTTTTTTGTTGTTTAAAGATATGTGCAAATTCAGGCAGCAGCATTATGTACTATTAACTTCGTTTATG
TGGAAGTGCGCACTATTTTGGGTTTTGGCTGCATTTTTGGTTTCCATCTTTTCAATTCAATTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis