Browse Element(s) Details


Os.12282.1.S1_a_at

Description gb:AK068026.1
DB_XREF= gi:32978044
TID=Os.12282.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.12282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131K12, full insert sequence.
FL= gb:AK068026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0856910/11Cycloartenol synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08530Os.9021.4.S1_at9/1111+4501064..4503989expressed protein
LOC_Os11g08536OsAffx.7046.1.S1_at11/1111+4505263..4506128hypothetical protein
LOC_Os11g08542NANA11+4506684..4509654retrotransposon protein, putative, unclassified
LOC_Os11g08550OsAffx.11259.1.S1_at1/1111+4510000..4515641retrotransposon protein, putative, unclassified
LOC_Os11g08569Os.12282.1.S1_a_at10/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.24410.1.S1_s_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_x_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.31929.5.S1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08569Os.6502.1.A1_at1/1111+4518244..4553813Cycloartenol synthase, putative, expressed
LOC_Os11g08590OsAffx.30887.1.S1_at11/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.17282.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.27502.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08590Os.52782.1.S1_at1/1111+4553405..4562257expressed protein
LOC_Os11g08600OsAffx.30888.1.S1_at11/1111+4565018..4567366hypothetical protein
LOC_Os11g08610Os.56258.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified
LOC_Os11g08610OsAffx.7914.1.S1_at1/1111+4572750..4579634retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019745biological_processpentacyclic triterpenoid biosynthesis
GO:0016871molecular_functioncycloartenol synthase activity
GO:0042299molecular_functionlupeol synthase activity
GO:0042300molecular_functionbeta-amyrin synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12282.1.S1_a_at--693--10771Chr11:4547989..4548013 (25 bp)
TTGTCAAAACAGCTTCCTTCGGGTG
LOC_Os11g08569
Os.12282.1.S1_a_at--510--7571Chr11:4548018..4548042 (25 bp)
GGGCGAGAGCTATTTGTCATGTCAT
LOC_Os11g08569
Os.12282.1.S1_a_at--164--7131NONE
GTCATGACGAGGTTTACACAAATCT
NONE
Os.12282.1.S1_a_at--398--5571Chr11:4550078..4550102 (25 bp)
GAAAGAGATCCAGTGCCTCTGCATC
LOC_Os11g08569
Os.12282.1.S1_a_at--1149--1691Chr11:4550107..4550131 (25 bp)
AGCCAAGGCTTTGCTCAACTTGCAA
LOC_Os11g08569
Os.12282.1.S1_a_at--570--9191Chr11:4553489..4553513 (25 bp)
TGCCATGATCAGTTATTCCCAGTAC
LOC_Os11g08569
Os.12282.1.S1_a_at--620--8171Chr11:4553515..4553539 (25 bp)
GGAACATCTTCCCTATAATGGCTCT
LOC_Os11g08569
Os.12282.1.S1_a_at--520--6531Chr11:4553589..4553613 (25 bp)
GATTTTAAGTTATGCCAGCTCTTGG
LOC_Os11g08569
Os.12282.1.S1_a_at--596--4411Chr11:4553602..4553626 (25 bp)
GCCAGCTCTTGGCATGTTGGTTTGC
LOC_Os11g08569
Os.12282.1.S1_a_at--775--1171Chr11:4553659..4553683 (25 bp)
AGTACTCTCTACTGTTCTAGCGTTT
LOC_Os11g08569
Os.12282.1.S1_a_at--114--8531Chr11:4553754..4553778 (25 bp)
TGGAACATACTGCTTCCTTGTAGTT
LOC_Os11g08569
Target Sequence 
TTGTCAAAACAGCTTCCTTCGGGTGGCTGGGGCGAGAGCTATTTGTCATGTCATGACGAGGTTTACACAAATCTTAAAGG
CAACCGACCTCACGGTACGCACACTGCGTGGGCCNATGATTGCACTAATTGATGCAGGGCAGGCTGAAAGAGATCCAGTG
CCTCTGCATCGAGCAGCCAAGGCTTTGCTCAACTTGCAATTAGAGGATGGAGAATTTCCACAGCAAGAAATTGTTGGAGT
CTTTCTCCAAACTGCCATGATCAGTTATTCCCAGTACAGGAACATCTTCCCTATAATGGCTCTCACANGGTATCGCCGCC
GAGTACTGCTTGNAGGCAACATATAGGAGCATGATTTTAAGTTATGCCAGCTCTTGGCATGTTGGTTTGCCAATAAAGTT
ACATTTCACCTCCCCTAGCAGCAGTACTCTCTACTGTTCTAGCGTTTGTATTTTGTATTTTCTAAGAAAAAAATGTTTTA
CCGCATTTACTTAGTTCCCTTTGTTTGTAATAAAACATGGAACATACTGCTTCCTTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12282.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis