Browse Element(s) Details


Os.12594.1.S1_x_at

Description gb:AF017364.1
DB_XREF= gi:2407282
TID=Os.12594.1
CNT=609
FEA=FLmRNA
TIER=FL+Stack
STK=77
UG=Os.12594 (NCBI UniGene Cluster)
DEF=Oryza sativa ribulose 1,5-bisphosphate carboxylase small subunit mRNA, complete cds.
PROD=ribulose 1,5-bisphosphate carboxylase smallsubunit
FL= gb:AK061611.1 gb:AF017364.1 gb:AF052305.1 gb:L22155.1 gb:AK121444.1 gb:AK119219.1 gb:D00643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g176009/11Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17550OsAffx.7619.1.S1_at11/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17550OsAffx.28164.2.S1_at1/1112+10056128..10065032Leucine Rich Repeat family protein, expressed
LOC_Os12g17560NANA12+10066226..10066525hypothetical protein
LOC_Os12g17570OsAffx.31781.1.S1_x_at11/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.51561.1.S1_x_at6/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17570Os.28229.2.S1_x_at1/1112+10067571..10069441GDSL-motif lipase/hydrolase, putative
LOC_Os12g17580OsAffx.17234.1.S1_at1/1112+10072714..10073298transposon protein, putative, unclassified
LOC_Os12g17590OsAffx.31782.1.S1_at10/1112+10075714..10077504expressed protein
LOC_Os12g17600Os.12594.1.S1_x_at9/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.39363.1.A1_x_at2/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17600Os.28218.1.S1_x_at1/1112+10077831..10079028Ribulose bisphosphate carboxylase small chain C, chloroplast precursor, putative, expressed
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_x_at7/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.1.S1_x_at6/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.53142.1.S1_at3/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.4.S1_x_at2/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_s_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.23706.1.A1_x_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015977biological_processcarbon utilization by fixation of carbon dioxide
GO:0009573cellular_componentribulose bisphosphate carboxylase complex (sensu Magnoliophyta)
GO:0016984molecular_functionribulose-bisphosphate carboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12594.1.S1_x_at--605--4171Chr12:10078311..10078335 (25 bp)
CCCATGTTCGGGTGCACTGACGCCA
LOC_Os12g17600
Os.12594.1.S1_x_at--28--2951Chr12:10078254..10078278 (25 bp)
AAGGCGTACCCTGATGCATTCGTCC
LOC_Os12g17600
Os.12594.1.S1_x_at--331--891Chr12:10078253..10078277 (25 bp)
AGGCGTACCCTGATGCATTCGTCCG
LOC_Os12g17600
Os.12594.1.S1_x_at--1073--4631Chr12:10078251..10078275 (25 bp)
GCGTACCCTGATGCATTCGTCCGTA
LOC_Os12g17600
Os.12594.1.S1_x_at--1123--5011Chr12:10078207..10078228 (22 bp)
GCAGGTGCAGCTCATCAGCTTCCAT
LOC_Os12g17600
Os.12594.1.S1_x_at--128--1031Chr12:10078207..10078226 (20 bp)
AGGTGCAGCTCATCAGCTTCCATCG
LOC_Os12g17600
Os.12594.1.S1_x_at--32--9611NONE
TCATCAGCTTCCATCGCCTACAAGC
NONE
Os.12594.1.S1_x_at--1001--1671Chr12:10078138..10078162 (25 bp)
AGCCGTCATCGTCATATATAGCCTT
LOC_Os12g17600
Os.12594.1.S1_x_at--705--3791Chr12:10078086..10078106 (21 bp)
CTCCCACCTTGTTTCGTGTGTGTTC
LOC_Os12g17600
Os.12594.1.S1_x_at--55--3631NONE
CTTGTTTCGTGTGTGTTCCCAGTTT
NONE
Os.12594.1.S1_x_at--1050--6811Chr12:10078012..10078036 (25 bp)
GTTTTTGTTTCACCTGATCTCTCTC
LOC_Os12g17600
Target Sequence 
CCCATGTTCGGGTGCACTGACGCCACCCAGGTGCTCAAGGAGCTCGAGGAGGCCAAGAAGGCGTACCCTGATGCATTCGT
CCGTATCATCGGCTTCGACAACGTCAGGCAGGTGCAGCTCATCAGCTTCCATCGCCTACAAGCCCCCGGGCTGCGAGGAG
TCTGGTGGCAACTAAGCCGTCATCGTCATATATAGCCTTNGTTTAATTGTTCATCTCTGATTCGATGATGTCTCCCACCT
TGTTTCGTGTGTGTTCCCAGTTTGTTCATCGTCTTTTGATTTTACCGGCCGTGCTCTGCTTTTGTTTTTGTTTCACCTGA
TCTCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12594.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis