Browse Element(s) Details


Os.12630.1.S1_at

Description gb:AK069023.1
DB_XREF= gi:32979047
TID=Os.12630.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003F18, full insert sequence.
FL= gb:AK069023.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0774011/11Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07670Os.9399.1.S1_at11/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07670Os.5209.2.S1_at1/1112+3854807..3860044Endomembrane protein 70 containing protein, expressed
LOC_Os12g07680Os.15933.1.A1_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07680Os.15933.1.A1_s_at11/1112+3860315..3862882RNase P subunit p30 family protein, expressed
LOC_Os12g07690OsAffx.19537.1.S1_x_at11/1112+3863181..3863606Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os12g07700Os.5621.1.S1_s_at11/1112+3866730..3868852nitrogen fixation protein, putative, expressed
LOC_Os12g07710Os.9156.1.S1_at11/1112+3869943..3870558expressed protein
LOC_Os12g07720Os.276.1.S1_at11/1112+3872349..3876348Activator 1 37 kDa subunit, putative, expressed
LOC_Os12g07730Os.9655.1.S1_s_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07730Os.9655.1.S1_at11/1112+3878353..3884319SWIRM domain containing protein, expressed
LOC_Os12g07740Os.12630.1.S1_at11/1112+3884395..3888692Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed
LOC_Os12g07750OsAffx.22848.4.S1_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.3.S1_x_at2/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07750OsAffx.22848.4.S1_x_at1/1112+3892614..3897332retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g07760OsAffx.7518.1.S1_at11/1112+3908135..3908659hypothetical protein
LOC_Os12g07760Os.19951.1.S1_x_at1/1112+3908135..3908659hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005739cellular_componentmitochondrion
GO:0003743molecular_functiontranslation initiation factor activity
GO:0003746molecular_functiontranslation elongation factor activity
GO:0008135molecular_functiontranslation factor activity, nucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12630.1.S1_at--531--9671Chr12:3884812..3884836 (25 bp)
TCAGCCGCCGTGTCGAGAAGCATTG
LOC_Os12g07740
Os.12630.1.S1_at--1103--8671Chr12:3884718..3884742 (25 bp)
TGTGTTTCTCCAGGCAGAAATCCTA
LOC_Os12g07740
Os.12630.1.S1_at--796--8251Chr12:3884706..3884730 (25 bp)
GGCAGAAATCCTAATCTTTGAGAGA
LOC_Os12g07740
Os.12630.1.S1_at--1038--10851Chr12:3884604..3884628 (25 bp)
TTGGAAGCCATGTCATTGCGTGCTA
LOC_Os12g07740
Os.12630.1.S1_at--117--751Chr12:3884595..3884619 (25 bp)
ATGTCATTGCGTGCTATCGAATTCA
LOC_Os12g07740
Os.12630.1.S1_at--1064--4651Chr12:3884587..3884611 (25 bp)
GCGTGCTATCGAATTCAGCTATGCT
LOC_Os12g07740
Os.12630.1.S1_at--714--10511Chr12:3884574..3884598 (25 bp)
TTCAGCTATGCTACAAAAGTTTTGC
LOC_Os12g07740
Os.12630.1.S1_at--513--2831Chr12:3884558..3884582 (25 bp)
AAGTTTTGCTTACATCTGCATTCTG
LOC_Os12g07740
Os.12630.1.S1_at--1051--4891Chr12:3884551..3884575 (25 bp)
GCTTACATCTGCATTCTGAATTATG
LOC_Os12g07740
Os.12630.1.S1_at--940--8051Chr12:3884527..3884551 (25 bp)
GGAGAATCGTTTTTTCACCATGTTA
LOC_Os12g07740
Os.12630.1.S1_at--357--4951Chr12:3884458..3884482 (25 bp)
GCATTATTGCATTTCTCACTGAATC
LOC_Os12g07740
Target Sequence 
TCAGCCGCCGTGTCGAGAAGCATTGGCGCCTCATCGGATGGGGCCAGATCCAGGCTGGCACGACGCTCGAAGTTCCACCA
TGCCCGCTCTGAANTGTGTTTCTCCAGGCAGAAATCCTAATCTTTGAGAGAAGATAGAAGAGATGTGGAAGGGCAGAGAG
CTCCTAGGCACTATTTTTGTGAGGTGGANGAGAAAACATGAATTTGATTTGGAAGCCATGTCATTGCGTGCTATCGAATT
CAGCTATGCTACAAAAGTTTTGCTTACATCTGCATTCTGAATTATGGAGAATCGTTTTTTCACCATGTTATAATGAATTT
GAAGTGGGGNGANNAACCTACTAATTGATCAGAATTGCATTATTGCATTTCTCACTGAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis