Browse Element(s) Details


Os.12822.1.S1_at

Description gb:AK106780.1
DB_XREF= gi:32991989
TID=Os.12822.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H04, full insert sequence.
FL= gb:AK106780.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4412010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g44070Os.17189.1.S1_at11/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44070Os.57489.1.S1_x_at1/115+25541903..25543941Ras-related protein RIC2, putative, expressed
LOC_Os05g44080Os.27426.1.S1_at11/115+25545883..25551826MAP kinase-activating protein C22orf5, putative, expressed
LOC_Os05g44090OsAffx.15098.1.S1_at11/115+25552756..25553706uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os05g44100Os.8735.1.S1_at11/115+25558391..25563203Trehalose synthase, putative, expressed
LOC_Os05g44110OsAffx.27298.1.S1_at11/115+25563832..25565808hypothetical protein
LOC_Os05g44110OsAffx.10929.1.S1_x_at1/115+25563832..25565808hypothetical protein
LOC_Os05g44120Os.12822.1.S1_at10/115+25567169..25569078expressed protein
LOC_Os05g44130Os.10081.1.S1_at10/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44130Os.34312.1.S1_at1/115+25570092..25574459Gamma-glutamyl hydrolase precursor, putative, expressed
LOC_Os05g44140OsAffx.27299.1.S1_at11/115+25575711..25576838Non-symbiotic hemoglobin 1, putative
LOC_Os05g44150OsAffx.27300.1.S1_at11/115+25578674..25579165hypothetical protein
LOC_Os05g44160NANA5+25579908..25582124hypothetical protein
LOC_Os05g44170OsAffx.27302.1.S1_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44170Os.24483.1.A1_s_at11/115+25583031..25584184Cyclic phosphodiesterase, putative, expressed
LOC_Os05g44180OsAffx.27303.1.S1_at11/115+25585377..25586163FLOWERING LOCUS T protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12822.1.S1_at--401--511NONE
ATCGAGTTCGACGATGACCATCCTT
NONE
Os.12822.1.S1_at--1007--551Chr05:25568559..25568579 (21 bp)
ATCCTTTTGGTAGAGTCGTCGTGAC
LOC_Os05g44120
Os.12822.1.S1_at--786--8891Chr05:25568732..25568756 (25 bp)
TGAGTTCCAGTTTCCTTAGGACGAC
LOC_Os05g44120
Os.12822.1.S1_at--1126--6731Chr05:25568802..25568826 (25 bp)
GTTCATTGCACCAGAGTCTTCAGTT
LOC_Os05g44120
Os.12822.1.S1_at--1144--9711Chr05:25568842..25568866 (25 bp)
TCAAGCCTTAGTATCCTGGGCAAGA
LOC_Os05g44120
Os.12822.1.S1_at--410--7611Chr05:25568859..25568883 (25 bp)
GGGCAAGACCCAAACTATCTTCAGT
LOC_Os05g44120
Os.12822.1.S1_at--368--10531Chr05:25568878..25568902 (25 bp)
TTCAGTTTCTATCATGTCGTGTCCT
LOC_Os05g44120
Os.12822.1.S1_at--626--7191Chr05:25568893..25568917 (25 bp)
GTCGTGTCCTCTTAGCTTAGTTAAA
LOC_Os05g44120
Os.12822.1.S1_at--1158--7431Chr05:25568950..25568974 (25 bp)
GTGTAATCGGTCTTCGGTCAGTTAA
LOC_Os05g44120
Os.12822.1.S1_at--860--9831Chr05:25568972..25568996 (25 bp)
TAAAGGTGCCTTTTCAGTTTCAGTT
LOC_Os05g44120
Os.12822.1.S1_at--674--6851Chr05:25568994..25569018 (25 bp)
GTTTGTTCAATTGCAGTTCCTCTGT
LOC_Os05g44120
Target Sequence 
ATCGAGTTCGACGATGACCATCCTTTTGGTAGAGTCGTCGTGACGGACTTCCCTCCGTCGTCCAAGCCGAACGATGATCT
GTGAAGCCAGAACAAGTCCCACTCGCGCCGAGGATGATGAGTTCCAGTTTCCTTAGGACGACGAATTAAGCTGAATACCA
ACAAGCTTATGGATTGGAGGCCGGCGGGTTCATTGCACCAGAGTCTTCAGTTTCTAGCTTTGGCTCTTCAAGCCTTAGTA
TCCTGGGCAAGACCCAAACTATCTTCAGTTTCTATCATGTCGTGTCCTCTTAGCTTAGTTAAACCCAACCTCTTAAAGGT
AGTGGTTTTCAGTCAGTGTAATCGGTCTTCGGTCAGTTAAAGGTGCCTTTTCAGTTTCAGTTTGTTCAATTGCAGTTCCT
CTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis