Browse Element(s) Details


Os.13489.1.S1_at

Description gb:AK102098.1
DB_XREF= gi:32987307
TID=Os.13489.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033083J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033083J16, full insert sequence.
FL= gb:AK102098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0724011/11RE11282p, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07190OsAffx.2534.1.S1_at11/112+3694689..3699524expressed protein
LOC_Os02g07200Os.19629.1.S1_x_at11/112+3703071..3705335protein-O-fucosyltransferase 1, putative, expressed
LOC_Os02g07210OsAffx.11926.1.S1_s_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07210Os.8426.1.S1_at11/112+3705918..3709901OTU-like cysteine protease family protein, putative, expressed
LOC_Os02g07220Os.51202.1.S1_at9/112+3711183..3713404immunophilin, putative, expressed
LOC_Os02g07230Os.14476.1.S1_a_at11/112+3715295..3718259Porphobilinogen deaminase, chloroplast precursor, putative, expressed
LOC_Os02g07240Os.13489.1.S1_at11/112+3718307..3720111RE11282p, putative, expressed
LOC_Os02g07250Os.54060.1.S1_at11/112+3720871..3724567expressed protein
LOC_Os02g07260Os.26566.1.S1_at11/112+3727491..3731254Phosphoglycerate kinase, cytosolic, putative, expressed
LOC_Os02g07270OsAffx.22708.3.S1_x_at8/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07270OsAffx.22708.4.S1_x_at7/112+3733921..3735012retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07280NANA2+3736136..3737851retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_x_at11/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.5.S1_at10/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.2.S1_x_at6/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07290OsAffx.22708.1.S1_x_at2/112+3738392..3738964retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g07300OsAffx.24147.1.S1_at11/112+3742581..3742987hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13489.1.S1_at--865--8831Chr02:3719391..3719415 (25 bp)
TGATACCACACCATCGGCAGAGGAT
LOC_Os02g07240
Os.13489.1.S1_at--119--9971Chr02:3719362..3719386 (25 bp)
TACCGCGGTGCTTTCATTTGCTAAC
LOC_Os02g07240
Os.13489.1.S1_at--841--10711Chr02:3719349..3719369 (21 bp)
TTGCTAACCGTTGCTAATGCTATGC
LOC_Os02g07240
Os.13489.1.S1_at--456--10131Chr02:3718837..3718860 (24 bp)
TATGCACAAGCCAGTGACCGCTGAA
LOC_Os02g07240
Os.13489.1.S1_at--535--6031Chr02:3718812..3718836 (25 bp)
GAGATGGCTTACATGTCCGCAATGC
LOC_Os02g07240
Os.13489.1.S1_at--407--8991Chr02:3718674..3718698 (25 bp)
TGAACCATCCTGACTATCAACCAAT
LOC_Os02g07240
Os.13489.1.S1_at--555--211Chr02:3718585..3718609 (25 bp)
ATTTGAATGCCGGATACTCTGCTTC
LOC_Os02g07240
Os.13489.1.S1_at--436--10651Chr02:3718563..3718587 (25 bp)
TTCCGGTGACCAGGCTTATGTTACA
LOC_Os02g07240
Os.13489.1.S1_at--335--1551Chr02:3718489..3718513 (25 bp)
AGCTTAGGACTCTGAACCTGCATCG
LOC_Os02g07240
Os.13489.1.S1_at--797--1751Chr02:3718474..3718498 (25 bp)
ACCTGCATCGGTTACTCTGTACTAG
LOC_Os02g07240
Os.13489.1.S1_at--815--1391Chr02:3718414..3718438 (25 bp)
AGACTGTACGCTCTACTTGACGTGT
LOC_Os02g07240
Target Sequence 
TGATACCACACCATCGGCAGAGGATCCCCTACCGCGGTGCTTTCATTTGCTAACCGTTGCTAATGCTATGCACAAGCCAG
TGACCGCTGAAGAGATGGCTTACATGTCCGCAATGCAGAATCAGAGCAGTTAACAGAGATTCATGACATGATGAAGCTGC
AATTTCACATGATATGACTGCAGCATTTGTAACAAAAAAGCTACTAGCTATTCAGTAGTTTCCATCAGCTGAACCATCCT
GACTATCAACCAATCTAGCAAGCAATCTACTATTTCAGTGTCAAGTCCCAACTGAATCAGAGATTAGTAGCTGTGAGAAT
TTGAATGCCGGATACTCTGCTTCCGGTGACCAGGCTTATGTTACATGCAAGAAAATTCGCATCAAATGTTCTAGTACTGT
TTTTGAGTAATTTTAGCTTAGGACTCTGAACCTGCATCGGTTACTCTGTACTAGTATGTCAGTAACCTGTAATGTTTGAA
CAGTGATCCAGACTGTACGCTCTACTTGACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis