Browse Element(s) Details


Os.13736.1.S1_at

Description gb:AK101684.1
DB_XREF= gi:32986893
TID=Os.13736.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033058N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058N01, full insert sequence.
FL= gb:AK101684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4172011/11CCAAT-box transcription factor complex WHAP10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41670Os.20602.2.S1_x_at9/117+24968982..24971156hAT family dimerisation domain containing protein
LOC_Os07g41680Os.7478.2.S1_x_at10/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41680Os.52981.1.S1_at1/117+24971913..24974887undecaprenyl diphosphate synthase family protein, expressed
LOC_Os07g41694Os.52740.1.S1_x_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694OsAffx.28862.1.S1_s_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.53274.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.52740.1.S1_at11/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41694Os.54794.1.S1_x_at5/117+24982935..24991142Leucine Rich Repeat family protein, expressed
LOC_Os07g41710Os.17625.1.S1_at11/117+24992226..24994683expressed protein
LOC_Os07g41720Os.13736.1.S1_at11/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41720Os.7345.1.S1_x_at1/117+24995030..24999525CCAAT-box transcription factor complex WHAP10, putative, expressed
LOC_Os07g41730Os.7400.1.S1_at11/117+25005528..25010886Protein bem46, putative, expressed
LOC_Os07g41740Os.9870.1.S1_at11/117+25011811..25016082PHD finger family protein, putative, expressed
LOC_Os07g41750Os.5498.1.S1_at11/117+25017743..2502001540S ribosomal protein S3-A, putative, expressed
LOC_Os07g41760OsAffx.28863.1.S1_at11/117+25020595..25021008hypothetical protein
LOC_Os07g41770Os.31312.5.S1_x_at4/117+25023246..25026589retrotransposon protein, putative, unclassified
LOC_Os07g41770Os.31312.2.S1_x_at3/117+25023246..25026589retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13736.1.S1_at--499--3631Chr07:24995536..24995560 (25 bp)
CTTCAGAATGGCACCGGTAGCGCGC
LOC_Os07g41720
Os.13736.1.S1_at--785--4611Chr07:24995485..24995509 (25 bp)
GCGAGCGTCTCAACCAGCAGAGAAT
LOC_Os07g41720
Os.13736.1.S1_at--345--7831Chr07:24995455..24995479 (25 bp)
GGTAACCATGAGCAGAGCCACTTCC
LOC_Os07g41720
Os.13736.1.S1_at--639--3631Chr07:24995416..24995440 (25 bp)
CTTCCCACAATGAGCTTCAGAGCGC
LOC_Os07g41720
Os.13736.1.S1_at--168--811Chr07:24995379..24995403 (25 bp)
ATGGGAAGCTGGTCGCGAACGCCAT
LOC_Os07g41720
Os.13736.1.S1_at--319--9671Chr07:24995354..24995378 (25 bp)
TCACCAGCGCGTTTCCATGATGAGG
LOC_Os07g41720
Os.13736.1.S1_at--649--2871Chr07:24995312..24995336 (25 bp)
AAGTGGGTTCAGCTCAGCACCATCA
LOC_Os07g41720
Os.13736.1.S1_at--818--1971Chr07:24995139..24995163 (25 bp)
ACTGACTGTTGGTTCTGTTTGTGGA
LOC_Os07g41720
Os.13736.1.S1_at--777--6331Chr07:24995116..24995140 (25 bp)
GATGCTTATATCTGTACTTGCTGTA
LOC_Os07g41720
Os.13736.1.S1_at--796--5531Chr07:24995070..24995094 (25 bp)
GAAACCCTGAAACTGATGGTCCCCG
LOC_Os07g41720
Os.13736.1.S1_at--377--7791Chr07:24995053..24995077 (25 bp)
GGTCCCCGTGAATATTGTAGCTTGC
LOC_Os07g41720
Target Sequence 
CTTCAGAATGGCACCGGTAGCGCGCCTTCAGCTTCCTCTCCCTCTGAAATCGCGAGCGTCTCAACCAGCAGAGAATTCCT
TGGTAACCATGAGCAGAGCCACTTCCCCTCAGCTGGCTTCCTTCCCACAATGAGCTTCAGAGCGCAGAATGGCGGAGATG
GGAAGCTGGTCGCGAACGCCATTCACCAGCGCGTTTCCATGATGAGGTGAGGTGAAGAGGGGTGAAGTGGGTTCAGCTCA
GCACCATCACTTTGGCTCTCTCCCTGCTGGTGGCAATTCATCCTTGGCTTATGAAAATACCTTATGGGAAAAAAAAAAGT
AGTTTCATCCTCAAATGGACCAAACATGTGTGGCTCCATTTTAAGTTTTCCTGTAACTAAAAGCACTGCAATGATCAACT
GACTGTTGGTTCTGTTTGTGGATGCTTATATCTGTACTTGCTGTATCTAATACTGAACTCTAAGTTGAAACCCTGAAACT
GATGGTCCCCGTGAATATTGTAGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis