Browse Element(s) Details


Os.14008.1.S1_at

Description gb:AK070394.1
DB_XREF= gi:32980418
TID=Os.14008.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049B09, full insert sequence.
FL= gb:AK104892.1 gb:AK102419.1 gb:AK070394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5367011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53630Os.31312.2.S1_x_at4/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53630Os.31312.5.S1_x_at3/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_x_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53650OsAffx.22848.4.S1_at2/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.4.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.3.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53660OsAffx.12627.1.S1_at11/112+32816969..32817880expressed protein
LOC_Os02g53670Os.14008.1.S1_at11/112+32821977..32826900Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g53680Os.1811.1.S1_at11/112+32826963..32830612replication factor-a protein 1 containing protein, expressed
LOC_Os02g53690Os.2347.1.S1_a_at11/112+32834495..32836587expressed protein
LOC_Os02g53690OsAffx.27547.1.S1_x_at1/112+32834495..32836587expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14008.1.S1_at--157--5711Chr02:32826162..32826186 (25 bp)
GACTAGCCTTCTCATCATATTCGTA
LOC_Os02g53670
Os.14008.1.S1_at--283--6491Chr02:32826489..32826513 (25 bp)
GATACCAGTGTCGATTCTGCTACGA
LOC_Os02g53670
Os.14008.1.S1_at--147--651Chr02:32826532..32826556 (25 bp)
ATGCAGTCTCAAGCTGGCGACGTGA
LOC_Os02g53670
Os.14008.1.S1_at--281--6811Chr02:32826570..32826594 (25 bp)
GTTTTCAGGGCAGAGCACTACGGTT
LOC_Os02g53670
Os.14008.1.S1_at--570--1191Chr02:32826606..32826630 (25 bp)
AGTTTCGGGTTTCTTGTGATCCACG
LOC_Os02g53670
Os.14008.1.S1_at--1009--6271Chr02:32826667..32826691 (25 bp)
GATGTACGCTTTTGGACGTCTGTGA
LOC_Os02g53670
Os.14008.1.S1_at--819--5131Chr02:32826708..32826732 (25 bp)
GCAAAGTTGTGATCGCGACTCGCGT
LOC_Os02g53670
Os.14008.1.S1_at--705--4091Chr02:32826723..32826747 (25 bp)
CGACTCGCGTTCTCGTGCAAAAGAA
LOC_Os02g53670
Os.14008.1.S1_at--685--6871Chr02:32826761..32826785 (25 bp)
GTATTGTTTGCTCCTTTTTCTACAC
LOC_Os02g53670
Os.14008.1.S1_at--1093--2171Chr02:32826790..32826814 (25 bp)
ACACTTCCTATGTTCTCCGAGAGAT
LOC_Os02g53670
Os.14008.1.S1_at--1066--5231Chr02:32826870..32826894 (25 bp)
GAATAAATGCTCCTTTTTCGTTTGC
LOC_Os02g53670
Target Sequence 
GACTAGCCTTCTCATCATATTCGTACCGCACCTCGGTGGATCTTAAGGACAAATGGCGGAATCTGATCAGGGCCAGCCAG
ACACAACTTTCCACTGAAAACGATGGTGTTTGTCCACGGAAGAGCAATCCTTCTGCCATACCGATACCAGTGTCGATTCT
GCTACGAGTAAAAAAACTGGCTGAGATGCAGTCTCAAGCTGGCGACGTGAGAGTGCCGATCAAGTTTTCAGGGCAGAGCA
CTACGGTTGTACAGGGGAAAGTTTCGGGTTTCTTGTGATCCACGTGTTGCATGCAAATAGAGGGGGAAACCACTGAGATT
GATGTACGCTTTTGGACGTCTGTGAATACCACACTTGTATAGCAAAGTTGTGATCGCGACTCGCGTTCTCGTGCAAAAGA
AAGAGTCGACGTATGTATTGTTTGCTCCTTTTTCTACACACGAACACTTCCTATGTTCTCCGAGAGATTTGACTAACGTA
CCTTGAGATTGACATAGTCACCTTAAACACCTTGTTATTGAAAGAATAAATGCTCCTTTTTCGTTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis