Browse Element(s) Details


Os.14297.1.S1_at

Description gb:AK070824.1
DB_XREF= gi:32980847
TID=Os.14297.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E03, full insert sequence.
FL= gb:AK099158.1 gb:AK060610.1 gb:AK070824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3817011/11Uracil phosphoribosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38130OsAffx.27218.1.S1_at9/115+22284122..22284778expressed protein
LOC_Os05g38140Os.49628.1.S1_at11/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38140OsAffx.15007.1.S1_at10/115+22288053..22290365bHLH transcription factor, putative, expressed
LOC_Os05g38150Os.12281.1.S1_at10/115+22290843..22297634Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os05g38160Os.4768.1.S1_at11/115+22300952..22304621prenylated rab acceptor, putative, expressed
LOC_Os05g38170Os.14297.1.S1_at11/115+22304766..22309272Uracil phosphoribosyltransferase, putative, expressed
LOC_Os05g38180Os.35939.1.S1_at11/115+22310793..22313901Yip1 domain containing protein, expressed
LOC_Os05g38190NANA5+22314953..22317577pentatricopeptide, putative
LOC_Os05g38200Os.54252.1.S1_at5/115+22319572..22320313hypothetical protein
LOC_Os05g38210Os.18091.1.S1_at11/115+22321114..22323041Mitochondrial glycoprotein, expressed
LOC_Os05g38220NANA5+22323967..22326684oxidoreductase, aldo/keto reductase family protein
LOC_Os05g38230Os.7452.1.S1_at11/115+22326728..22330124oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os05g38240Os.35344.18.S1_x_at11/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240Os.35344.3.S1_x_at9/115+22333338..22339385transposon protein, putative, Mutator sub-class
LOC_Os05g38240OsAffx.22940.5.S1_x_at3/115+22333338..22339385transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009116biological_processnucleoside metabolism
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14297.1.S1_at--885--131Chr05:22305485..22305720 (25 bp)
ATTAAAGTCGTTTCTGCTGTTGCAG
LOC_Os05g38170
Os.14297.1.S1_at--1102--3151Chr05:22305335..22305454 (25 bp)
AATTCCCTGGGCTTCATGTGTACAC
LOC_Os05g38170
Os.14297.1.S1_at--751--5391Chr05:22305127..22305151 (25 bp)
GAAGCTTCGCGACTTAACTATGCTA
LOC_Os05g38170
Os.14297.1.S1_at--700--9071Chr05:22305107..22305131 (25 bp)
TGCTAATTATCGCAGCTGCTGTTCT
LOC_Os05g38170
Os.14297.1.S1_at--438--5591Chr05:22305054..22305078 (25 bp)
GAAATTTCCGAGGATTCGAGCGCTT
LOC_Os05g38170
Os.14297.1.S1_at--814--10631Chr05:22305040..22305064 (25 bp)
TTCGAGCGCTTTTGACTTGGGAGTC
LOC_Os05g38170
Os.14297.1.S1_at--152--6051Chr05:22305005..22305029 (25 bp)
GAGTTCACGTTCACCTGTAGATTGC
LOC_Os05g38170
Os.14297.1.S1_at--208--1251Chr05:22304972..22304996 (25 bp)
AGATTCTCCCTTCGGAACTTATCGT
LOC_Os05g38170
Os.14297.1.S1_at--399--10091Chr05:22304911..22304935 (25 bp)
TAGGATTAGTTCACGTCCATCCACG
LOC_Os05g38170
Os.14297.1.S1_at--1104--7251Chr05:22304897..22304921 (25 bp)
GTCCATCCACGTTTACAATTTGTTG
LOC_Os05g38170
Os.14297.1.S1_at--1103--2131Chr05:22304837..22304861 (25 bp)
ACAGATTTCTTGATACTCCATGGGA
LOC_Os05g38170
Target Sequence 
ATTAAAGTCGTTTCTGCTGTTGCAGCGCCTCCTGCGCTTCAAAAGCTCAGCAACAAATTCCCTGGGCTTCATGTGTACAC
GGGAACAATTGATTCTGAAGTTGATGAGAGAGGGTTCATAGTTCCGGGGTTGGGAGATGCCGGCGATAGAAGCTTCGCGA
CTTAACTATGCTAATTATCGCAGCTGCTGTTCTACCTCCACGAGAGGGATTGGCGTAAGCTGAAATTTCCGAGGATTCGA
GCGCTTTTGACTTGGGAGTCAGGAACNGTCGAGTTCACGTTCACCTGTAGATTGCCTCGTTCGAGATTCTCCCTTCGGAA
CTTATCGTTTTGTAATTATCCATTTTGTGTTGTCATGTTGAATATAGGATTAGTTCACGTCCATCCACGTTTACAATTTG
TTGGGAATATGCATGTTTAATGTTTTCAATTATATCTTACAGATTTCTTGATACTCCATGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis