Browse Element(s) Details


Os.15220.1.S1_a_at

Description gb:AK121382.1
DB_XREF= gi:37991005
TID=Os.15220.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15220 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Rad6 (P0039H02.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127H21, full insert sequence.
FL= gb:AK121382.1 gb:AK070524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0724011/11Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07210OsAffx.28321.1.S1_x_at11/117+3571454..3572054expressed protein
LOC_Os07g07220Os.22816.1.S1_at9/117+3572757..3575085small nuclear ribonucleoprotein associated protein B, putative, expressed
LOC_Os07g07230Os.38580.1.S1_at7/117+3581660..3586072leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g07240Os.15220.1.S1_a_at11/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07240Os.15220.1.S2_at10/117+3584407..3592193Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os07g07250Os.37845.1.S1_at11/117+3594010..3597957Eukaryotic translation initiation factor 3 subunit 6, putative, expressed
LOC_Os07g07260Os.27399.1.S1_at11/117+3599027..3609095Glutamine-dependent NAD, putative, expressed
LOC_Os07g07270Os.14695.1.S1_at11/117+3609086..3612703BTB/POZ domain containing protein, expressed
LOC_Os07g07280Os.47892.1.S1_at11/117+3614470..3616490expressed protein
LOC_Os07g07280Os.20629.1.S1_x_at6/117+3614470..3616490expressed protein
LOC_Os07g07290OsAffx.28322.1.S1_at11/117+3616837..3617614hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15220.1.S1_a_at--887--8231Chr07:3588994..3589018 (25 bp)
GGCACGTTCAAGCTTACCTTGCAGT
LOC_Os07g07240
Os.15220.1.S1_a_at--349--2711Chr07:3588985..3589009 (25 bp)
AAGCTTACCTTGCAGTTTACAGAAG
LOC_Os07g07240
Os.15220.1.S1_a_at--42--1251Chr07:3588962..3588986 (25 bp)
AGATTATCCCAACAAGCCGCCGACT
LOC_Os07g07240
Os.15220.1.S1_a_at--449--2451Chr07:3588952..3588976 (25 bp)
AACAAGCCGCCGACTGTTCGGTTTG
LOC_Os07g07240
Os.15220.1.S1_a_at--416--4051Chr07:3588942..3588966 (25 bp)
CGACTGTTCGGTTTGTTTCTAGGAT
LOC_Os07g07240
Os.15220.1.S1_a_at--1058--6831Chr07:3588928..3588952 (25 bp)
GTTTCTAGGATGTTCCACCCAAATA
LOC_Os07g07240
Os.15220.1.S1_a_at--818--2711Chr07:3588771..3588795 (25 bp)
AAGCATCTGCTTGGATATTCTACAG
LOC_Os07g07240
Os.15220.1.S1_a_at--651--10571Chr07:3588754..3588778 (25 bp)
TTCTACAGAACCAGTGGAGCCCTAT
LOC_Os07g07240
Os.15220.1.S1_a_at--470--3151Chr07:3588057..3588077 (21 bp)
AATTCAGTCTTTGCTGTGTGATCCA
LOC_Os07g07240
Os.15220.1.S1_a_at--97--5411Chr07:3588008..3588032 (25 bp)
GAAGCTGCCAGACTGTTTAGTGAGA
LOC_Os07g07240
Os.15220.1.S1_a_at--537--3251Chr07:3587970..3587994 (25 bp)
CAACCGCAAGGTTCGTGAGATCGTG
LOC_Os07g07240
Target Sequence 
GGCACGTTCAAGCTTACCTTGCAGTTTACAGAAGATTATCCCAACAAGCCGCCGACTGTTCGGTTTGTTTCTAGGATGTT
CCACCCAAATATTTATGCAGATGGAAGCATCTGCTTGGATATTCTACAGAACCAGTGGAGCCCTATATATGATGTTGCTG
CCATATTGACTTCAATTCAGTCTTTGCTGTGTGATCCAAACCCCAACTCTCCAGCAAACTCAGAAGCTGCCAGACTGTTT
AGTGAGAACAAGCGAGAGTACAACCGCAAGGTTCGTGAGATCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15220.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis