Browse Element(s) Details


Os.15747.1.A1_at

Description gb:CB629670
DB_XREF= gi:29624659
DB_XREF=OSIIEb06B16.r
CLONE=OSIIEb06B16
TID=Os.15747.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.15747 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_200887.1 (A.thaliana) ABC transporter homolog PnATH - like (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3991010/11ATP-binding cassette sub-family F member 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified
LOC_Os09g39910Os.38157.1.S1_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.38157.1.S1_s_at11/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39910Os.15747.1.A1_at10/119+22882564..22887083ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os09g39920Os.55181.1.S1_at11/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39920OsAffx.19468.2.S1_at1/119+22896708..22902150beta-1,4-mannan synthase, putative, expressed
LOC_Os09g39930Os.12654.1.S1_at11/119+22902539..22904349Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os09g39940Os.21629.1.S1_at11/119+22907376..22908312Plastocyanin-like domain containing protein, expressed
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15747.1.A1_at--972--4871Chr09:22883139..22883163 (25 bp)
GCTATAGCCCATATGGTACCACTAC
LOC_Os09g39910
Os.15747.1.A1_at--312--4551Chr09:22883133..22883157 (25 bp)
GCCCATATGGTACCACTACTGTGTT
LOC_Os09g39910
Os.15747.1.A1_at--645--1711Chr09:22883122..22883146 (25 bp)
ACCACTACTGTGTTTATTATCTATA
LOC_Os09g39910
Os.15747.1.A1_at--1116--151Chr09:22883107..22883131 (25 bp)
ATTATCTATATTCGTCTTGTTGCAA
LOC_Os09g39910
Os.15747.1.A1_at--173--111Chr09:22883098..22883122 (25 bp)
ATTCGTCTTGTTGCAAGCTTGGTAG
LOC_Os09g39910
Os.15747.1.A1_at--315--6671Chr09:22883089..22883113 (25 bp)
GTTGCAAGCTTGGTAGTAACTATAT
LOC_Os09g39910
Os.15747.1.A1_at--343--2531Chr09:22883072..22883096 (25 bp)
AACTATATATACTTGACGCTCTTGC
LOC_Os09g39910
Os.15747.1.A1_at--33--251Chr09:22883066..22883090 (25 bp)
ATATACTTGACGCTCTTGCTGCTCT
LOC_Os09g39910
Os.15747.1.A1_at--16--10731Chr09:22883051..22883075 (25 bp)
TTGCTGCTCTTCCATTTGCAGCAGA
LOC_Os09g39910
Os.15747.1.A1_at--213--191Chr09:22883038..22883062 (25 bp)
ATTTGCAGCAGATGTACCGTCCTCT
LOC_Os09g39910
Os.15747.1.A1_at--621--2331NONE
AAAGATATCTACATGGAGCTGTACC
NONE
Target Sequence 
GCTATAGCCCATATGGTACCACTACTGTGTTTATTATCTATATTCGTCTTGTTGCAAGCTTGGTAGTAACTATATATACT
TGACGCTCTTGCTGCTCTTCCATTTGCAGCAGATGTACCGTCCTCTTCTTGGGGTCTCTGGAGAATGAGGAAACAGCAAG
AGCCAGCCAGCATAGCATGTATGTATGTATAGTGTAATTAGCTGGTTTGTTGGCGGTGCACATGCATAAGATATACTTCC
TCCGTTTTATATTATAAGACTATCTAGTATTGCCCACATTCATATATATATATATGTCTAGATTCATTAGCATCTATATG
AATGTGGGCAATGATAGAAAGTCTTATAATATGAAACGGAGGGAGTATTATCTTGGTTTGCACTTGCATGATCACCTGCT
GTAGTTATTATTATCAGTGACCAAGTTCCCCTAGCTAGCAGTAGCACTCCATGAAAAGATATCTACATGGAGCTGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15747.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis