Browse Element(s) Details


Os.15825.1.S2_at

Description gb:AK102284.1
DB_XREF= gi:32987493
TID=Os.15825.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.15825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089H07, full insert sequence.
FL= gb:AK102284.1 gb:AK065939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g537208/11SNF2 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53670Os.8795.1.S1_at11/114+31763285..31773399expressed protein
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0004386molecular_functionhelicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15825.1.S2_at--77--8591Chr04:31791364..31791388 (25 bp)
TGGTCAGACCCGTCCTGTAACCGTT
LOC_Os04g53720
Os.15825.1.S2_at--384--6811Chr04:31791342..31791366 (25 bp)
GTTTCCCGCTTAACTATCAAAGACA
LOC_Os04g53720
Os.15825.1.S2_at--746--6391Chr04:31791312..31791333 (22 bp)
GATCGGATTTTAGCTCTACAGGAGA
LOC_Os04g53720
Os.15825.1.S2_at--683--1311Chr04:31790860..31790884 (25 bp)
AGATGGTCCAATCTGCTTTTGGTGA
LOC_Os04g53720
Os.15825.1.S2_at--428--6291Chr04:31790798..31790822 (25 bp)
GATGATCTCCAATATCTATTCGGAA
LOC_Os04g53720
Os.15825.1.S2_at--1100--7591Chr04:31790768..31790792 (25 bp)
GGGCAGCTCATGATCCTTTTGTGGA
LOC_Os04g53720
Os.15825.1.S2_at--918--5671Chr04:31790712..31790736 (25 bp)
GACATAGTCCTATCAGCTATAGCTG
LOC_Os04g53720
Os.15825.1.S2_at--455--4431Chr04:31790630..31790654 (25 bp)
GCCATGTCTTTTGAATTGCTCTGAT
LOC_Os04g53720
Os.15825.1.S2_at--408--9731NONE
TAATTAGATTATGTTCCCCGTCGCT
NONE
Os.15825.1.S2_at--917--10651NONE
TTCCCCGTCGCTGGAATGGGATGTT
NONE
Os.15825.1.S2_at--219--2571NONE
AACTGTTACTCCTATAATTGTGATG
NONE
Target Sequence 
TGGTCAGACCCGTCCTGTAACCGTTTCCCGCTTAACTATCAAAGACACAGTGGAAGATCGGATTTTAGCTCTACAGGAGA
AGAAGAGAAAGATGGTCCAATCTGCTTTTGGTGAGGACAAACCTGGCGGCAGTGCAACTCGGCTCNCCATAGATGATCTC
CAATATCTATTCGGAATATGAGGGCAGCTCATGATCCTTTTGTGGAGCTAGCTGGTGAATTTTGTCGTAGCAAGACTGAC
ATAGTCCTATCAGCTATAGCTGATGACAAANCCTTAGCNCCATTAATTTATGCNCCCGATGTTCCTCCCCATGGGTGATG
CCATGTCTTTTGAATTGCTCTGATCATTGGACANAGAGGGTTAGTTAGCTTTTGTAATTAGATTATGTTCCCCGTCGCTG
GAATGGGATGTTGGGAGGTTTTACATCANAAGCAGCCTTTTTTTGTGTGTATATAAATATGGCATGCTAATTTTAATGTT
GGTTNTCTGATGGAATGCGTTACAAAGTACAAACTGTTACTCCTATAATTGTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15825.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis