Browse Element(s) Details


Os.15937.1.S1_at

Description gb:BI800580
DB_XREF= gi:16573284
DB_XREF=H014F04
CLONE=H014F04
TID=Os.15937.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.15937 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1336011/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15937.1.S1_at--910--4411Chr01:7441019..7441043 (25 bp)
GCCAGCCTTTCAATGTTGAAACCCT
LOC_Os01g13360
Os.15937.1.S1_at--668--6651Chr01:7441005..7441029 (25 bp)
GTTGAAACCCTGGACTACATAAAGT
LOC_Os01g13360
Os.15937.1.S1_at--1079--7911Chr01:7440939..7440963 (25 bp)
GGTTGTGAACCATCATCTAAGTGTG
LOC_Os01g13360
Os.15937.1.S1_at--1116--3871Chr01:7440872..7440896 (25 bp)
CTGTGAGAGGTCTAACTCCATATGA
LOC_Os01g13360
Os.15937.1.S1_at--82--3811Chr01:7440857..7440881 (25 bp)
CTCCATATGAGATCGGTAACATGTT
LOC_Os01g13360
Os.15937.1.S1_at--452--731Chr01:7440773..7440797 (25 bp)
ATGTTGTTCTTCCTGGGATAGGTGA
LOC_Os01g13360
Os.15937.1.S1_at--168--9631Chr01:7440740..7440764 (25 bp)
TCATGGAAGCCATCTCAGGTATCAT
LOC_Os01g13360
Os.15937.1.S1_at--519--151Chr01:7440661..7440685 (25 bp)
ATTATGGTTTCGAGTGTGTGTGATA
LOC_Os01g13360
Os.15937.1.S1_at--178--1171Chr01:7440624..7440648 (25 bp)
AGTAATGTAAGTCTCTTTTGTGTCA
LOC_Os01g13360
Os.15937.1.S1_at--1061--7951Chr01:7440571..7440595 (25 bp)
GGATCATTGGTCCTTCTTACATTTC
LOC_Os01g13360
Os.15937.1.S1_at--111--7791Chr01:7440563..7440587 (25 bp)
GGTCCTTCTTACATTTCTCGATGTA
LOC_Os01g13360
Target Sequence 
GCCAGCCTTTCAATGTTGAAACCCTGGACTACATAAAGTCACTTGACGAGGAAGAGGATATCAAGTTGCTCAANCTCAAT
GGTTGTGAACCATCATCTAAGTGTGTTCGTGNTTTTTCGTCTAAGCNCCATGATGTTGAAGAAGGGTNCTGTGAGAGGTC
TAACTCCATATGAGATCGGTAACATGTTGTGTAGGGAGAACATTACANCCAANTCAANGATTGAAGAGATTGTTGAAGAG
NCAGANNATGTTGTTCTTCCTGGGATAGGTGAAAAGGCATTCATGGAAGCCATCTCAGGTATCATGGATCGCNATCTCAA
TGAACTNTTCAANTGAAATGCTCCTCANGATGACTGTGAATTATGGTTTCGAGTGTGTGTGATAAGTGAATTTGTAAGTA
ATGTAAGTCTCTTTTGTGTCANGATATNGCCTCCATGAATAATAAGGAAGGATCATTGGTCCTTCTTACATTTCTCGATG
TA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15937.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis