Browse Element(s) Details


Os.1606.1.S1_at

Description gb:AK111969.1
DB_XREF= gi:37988632
TID=Os.1606.1
CNT=31
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.1606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsTATC (B1080D07.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-C11, full insert sequence.
FL= gb:AY303697.1 gb:AK111969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5643011/11receptor-like protein kinase 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56380Os.35344.18.S1_x_at8/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380Os.35344.3.S1_x_at7/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56380OsAffx.22940.5.S1_x_at4/114+33395871..33402334transposon protein, putative, Mutator sub-class
LOC_Os04g56390Os.51574.1.S1_at11/114+33404069..33404856expressed protein
LOC_Os04g56400Os.7879.1.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.7879.2.S1_at11/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.19294.1.S1_at3/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56400Os.50043.1.A1_at1/114+33405260..33411952Glutamine synthetase, chloroplast precursor, putative, expressed
LOC_Os04g56420Os.54165.1.S1_at10/114+33416837..33419323expressed protein
LOC_Os04g56430Os.1606.1.S1_at11/114+33422225..33423252receptor-like protein kinase 6, putative, expressed
LOC_Os04g56440Os.38313.1.S1_at10/114+33426039..33431062ENT domain containing protein, expressed
LOC_Os04g56450Os.172.2.S1_a_at11/114+33430036..33434781Protein phosphatase 2C containing protein, expressed
LOC_Os04g56460OsAffx.14435.1.S1_at11/114+33439264..33440325BTB/POZ domain containing protein, expressed
LOC_Os04g56470OsAffx.14436.1.S1_at11/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56470Os.26885.1.A1_at1/114+33442868..33444979amino acid transporter family protein, putative, expressed
LOC_Os04g56480Os.27464.1.S1_s_at9/114+33446004..33453652Protein pelota, putative, expressed
LOC_Os04g56480Os.49404.1.S1_at8/114+33446004..33453652Protein pelota, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1606.1.S1_at--839--7591Chr04:33422682..33422706 (25 bp)
GGGCAGCTGACGACCCTCATGAGCA
LOC_Os04g56430
Os.1606.1.S1_at--1128--8931Chr04:33422689..33422713 (25 bp)
TGACGACCCTCATGAGCAGCACCAA
LOC_Os04g56430
Os.1606.1.S1_at--836--7271Chr04:33422990..33423014 (25 bp)
GTGCCTCCTCAGGTCGGAGGTGTAC
LOC_Os04g56430
Os.1606.1.S1_at--227--8611Chr04:33423037..33423061 (25 bp)
TGGTGGTGCTGCGTGAGTAGGCGCT
LOC_Os04g56430
Os.1606.1.S1_at--770--10091Chr04:33423054..33423078 (25 bp)
TAGGCGCTGGCCATGCGTGAAGCTA
LOC_Os04g56430
Os.1606.1.S1_at--271--3911Chr04:33423060..33423084 (25 bp)
CTGGCCATGCGTGAAGCTAGAATAA
LOC_Os04g56430
Os.1606.1.S1_at--1048--8231Chr04:33423088..33423112 (25 bp)
GGCACAAATTAAGAGTGTTCCACCA
LOC_Os04g56430
Os.1606.1.S1_at--844--6111Chr04:33423100..33423124 (25 bp)
GAGTGTTCCACCAGAATAAATGTAT
LOC_Os04g56430
Os.1606.1.S1_at--783--10791Chr04:33423124..33423148 (25 bp)
TTGTATACTGAATAAACCTGCATGC
LOC_Os04g56430
Os.1606.1.S1_at--1034--311Chr04:33423128..33423152 (25 bp)
ATACTGAATAAACCTGCATGCAGGA
LOC_Os04g56430
Os.1606.1.S1_at--1070--1511Chr04:33423163..33423187 (25 bp)
AGCTGTAACCGGATTATACTATTGT
LOC_Os04g56430
Target Sequence 
GGGCAGCTGACGACCCTCATGAGCAGCACCAACATCAGCAGCGGCGCCGACGTCGCCGCCTACGACCGCGCGGTGACGCG
GCTGCTGGCGGCCACCGCGGAGTACGCGGCGGGGGACATCGCGAGGAAGCTGTTCGCGACGGGGCAGCGGGTGGGCGCCG
ACCCGGGGTTCCCCAACCTGTACGCGACGGCGCAGTGCGCGTTCGACATCACGCTGGAGGCGTGCCGCGGCTGCCTCGAG
GGCCTCGTCGCCAGGTGGTGGGACACGTTCCCGGCGAACGTCGACGGCGCCAGGATCGCCGGGCCGAGGTGCCTCCTCAG
GTCGGAGGTGTACCCGTTCTACACCGGCGCCCCGATGGTGGTGCTGCGTGAGTAGGCGCTGGCCATGCGTGAAGCTAGAA
TAAAATGGCACAAATTAAGAGTGTTCCACCAGAATAAATGTATTGTATACTGAATAAACCTGCATGCAGGATATCTATNT
AAGCTGTAACCGGATTATACTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis