Browse Element(s) Details


Os.16301.1.S1_at

Description gb:BI802275
DB_XREF= gi:16574979
DB_XREF=H075G08
CLONE=H075G08
TID=Os.16301.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16301 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transcription binding factor (OSJNBa0040E17.2), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1158011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein
LOC_Os10g11600OsAffx.18226.2.S1_at11/1110+6177974..6178375hypothetical protein
LOC_Os10g11610OsAffx.18226.1.S1_at7/1110+6178786..6179394hypothetical protein
LOC_Os10g11620OsAffx.30391.1.S1_at11/1110+6179930..6184650hypothetical protein
LOC_Os10g11630NANA10+6186187..6186393hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11640OsAffx.20640.1.S1_x_at11/1110+6187350..6187811hypothetical protein
LOC_Os10g11650Os.27435.1.S1_x_at5/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11650Os.46334.1.S1_x_at3/1110+6189419..6192069transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.2.S1_at11/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.1.S1_at3/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660OsAffx.22421.4.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11660Os.26886.3.S1_x_at1/1110+6195943..6198937transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16301.1.S1_at--196--2411Chr10:6170416..6170440 (25 bp)
AAACAGCACAAGTTTTCTCTTCCCA
LOC_Os10g11580
Os.16301.1.S1_at--172--5671Chr10:6170491..6170515 (25 bp)
GACATGGTGATAGTTTTCGTACTCT
LOC_Os10g11580
Os.16301.1.S1_at--527--4351Chr10:6170524..6170548 (25 bp)
CCAATATACCCCAGCTACATCAGGA
LOC_Os10g11580
Os.16301.1.S1_at--147--6191Chr10:6170634..6170658 (25 bp)
GAGGACTTACTTTTTCCTGACAAAG
LOC_Os10g11580
Os.16301.1.S1_at--449--6431Chr10:6170658..6170682 (25 bp)
GATCTTCCTGAGTGATCTACAAGAC
LOC_Os10g11580
Os.16301.1.S1_at--803--7971Chr10:6170739..6170763 (25 bp)
GGATGCATCCTGGTTAATCCATCGA
LOC_Os10g11580
Os.16301.1.S1_at--895--3031Chr10:6170754..6170778 (25 bp)
AATCCATCGACCATGTCTTAGTAGA
LOC_Os10g11580
Os.16301.1.S1_at--790--6071Chr10:6170777..6170801 (25 bp)
GAGTTTTCTTCTGTGTTTCTGTGTT
LOC_Os10g11580
Os.16301.1.S1_at--1010--351Chr10:6170847..6170871 (25 bp)
ATAAGTATGTGTTTCCGTGTGAGGC
LOC_Os10g11580
Os.16301.1.S1_at--597--6931Chr10:6170880..6170904 (25 bp)
GTAGTACCTTGTATTTCCATCCATC
LOC_Os10g11580
Os.16301.1.S1_at--149--10811Chr10:6170888..6170912 (25 bp)
TTGTATTTCCATCCATCTTCGTATG
LOC_Os10g11580
Target Sequence 
AAACAGCACAAGTTTTCTCTTCCCAGCATGCATGTCCTTCCCTAGAAGATAACTATGTTATTCCCATTCCTNCTGGACAT
GGTGATAGTTTTCGTACTCTTGATGAGNCCAATATACCCCAGCTACATCAGGANCAGAAAAACTTTATTTCACAAGATGC
TATTGNTTGGTGAAAACATTCCGCTGAATGAGTCTTTGGAAAAGAGCAAGCATAAGGATGAGGACTTACTTTTTCCTGAC
AAAGATCTTCCTGAGTGATCTACAAGACAGAAGATGAATNTTCATGACAATNACTAGGAATACAAATAAGCAACGAACTG
AAGAAGGATGCATCCTGGTTAATCCATCGACCATGTCTTAGTAGAGTTTTCTTCTGTGTTTCTGTGTTGAAGCTTTATGA
TTTACCTTATACTTTAGTCAAGATGAATAAGAAATAAGTATGTGTTTCCGTGTGAGGCGGTAATATGTAGTACCTTGTAT
TTCCATCCATCTTCGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis