Browse Element(s) Details


Os.17160.1.S1_s_at

Description gb:BQ907535
DB_XREF= gi:22306313
DB_XREF=P008C09
CLONE=P008C09
TID=Os.17160.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.17160 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566649.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0178011/11Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os02g584503/11Uncharacterized ACR, COG1399 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein
LOC_Os04g01810OsAffx.25825.1.S1_at11/114+510720..515159Terpene synthase, N-terminal domain containing protein, expressed
LOC_Os04g01820Os.10827.1.S1_x_at10/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g01820Os.46055.2.S1_x_at5/114+515910..519698transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17160.1.S1_s_at--512--1751Chr04:491182..491206 (25 bp)
ACCTGCAAAGGTCTCTGCGTTGGCT
LOC_Os04g01780
Os.17160.1.S1_s_at--701--9011Chr04:491185..491209 (25 bp)
TGCAAAGGTCTCTGCGTTGGCTGCG
LOC_Os04g01780
Os.17160.1.S1_s_at--943--4991Chr04:491256..491280 (25 bp)
GCAGGCTAAGGCTAAGAATGTTCAG
LOC_Os04g01780
Os.17160.1.S1_s_at--919--7392Chr04:491323..491347 (25 bp)
GTGATGTAAACACCGCACGGCAGAT
LOC_Os04g01780
Os.17160.1.S1_s_at--870--7032Chr04:491328..491352 (25 bp)
GTAAACACCGCACGGCAGATTTTAG
LOC_Os04g01780
Os.17160.1.S1_s_at--129--3372Chr04:491333..491357 (25 bp)
CACCGCACGGCAGATTTTAGACAGT
LOC_Os04g01780
Os.17160.1.S1_s_at--714--10371Chr04:491419..491443 (25 bp)
TTTTTTGAGCTCATATCCTACTGTA
LOC_Os04g01780
Os.17160.1.S1_s_at--1096--8891Chr04:491424..491448 (25 bp)
TGAGCTCATATCCTACTGTAAGACG
LOC_Os04g01780
Os.17160.1.S1_s_at--1048--4811Chr04:491427..491451 (25 bp)
GCTCATATCCTACTGTAAGACGGAA
LOC_Os04g01780
Os.17160.1.S1_s_at--1086--8851Chr04:491456..491480 (25 bp)
TGATGCCATGACGTGTCTGTTTGCG
LOC_Os04g01780
Os.17160.1.S1_s_at--316--9471Chr04:491471..491495 (25 bp)
TCTGTTTGCGTGTGTTCGAGGTACC
LOC_Os04g01780
Target Sequence 
ACCTGCAAAGGTCTCTGCGTTGGCTGCGGCGAAAATCTCANCACCAGCAGCTGCAGCTGCAACACAGAGAAACAGCAGGC
TAAGGCTAAGAATGTTCAGCGGCGAGGGCCTCTCAAANGACCTGTTGAAACCNCTGCAAAGGTGATGTAAACACCGCACG
GCAGATTTTAGACAGTGATATGTATGTAATACGNTGTAGCAGTATTCGAAGATAATATGTTTAGATGATAAATTTCNTTT
TTTGAGCTCATATCCTACTGTAAGACGGAAAAATTGATGCCATGACGTGTCTGTTTGCGTGTGTTCGAGGTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17160.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis