Browse Element(s) Details


Os.17328.1.S1_at

Description gb:AK072253.1
DB_XREF= gi:32982276
TID=Os.17328.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mitochondrial inner membrane translocating protein-like (P0492E07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023006L22, full insert sequence.
FL= gb:AK065714.1 gb:AK072253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2270011/11mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015462molecular_functionprotein-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17328.1.S1_at--118--4211Chr07:12782822..12782846 (25 bp)
CCCGCTGATGTATCTAATGTCTACT
LOC_Os07g22700
Os.17328.1.S1_at--690--2331Chr07:12782481..12782605 (25 bp)
AAAGCATCCACCTGGTGCGAACATT
LOC_Os07g22700
Os.17328.1.S1_at--770--3351Chr07:12782473..12782497 (25 bp)
CACCTGGTGCGAACATTATGACTAC
LOC_Os07g22700
Os.17328.1.S1_at--361--10611Chr07:12782411..12782435 (25 bp)
TTCTGTGGTTTCAGTGTTGAGGTTG
LOC_Os07g22700
Os.17328.1.S1_at--1048--6791Chr07:12782372..12782396 (25 bp)
GTTTTGGCTTTTGACAGTGGCATTT
LOC_Os07g22700
Os.17328.1.S1_at--329--10291Chr07:12782341..12782365 (25 bp)
TTTGCCTTCATTAACATTCACTTCG
LOC_Os07g22700
Os.17328.1.S1_at--216--2511Chr07:12782329..12782353 (25 bp)
AACATTCACTTCGTATTTCGTACAG
LOC_Os07g22700
Os.17328.1.S1_at--101--6891Chr07:12782317..12782341 (25 bp)
GTATTTCGTACAGTGTATTTTCCGT
LOC_Os07g22700
Os.17328.1.S1_at--730--7431Chr07:12782305..12782329 (25 bp)
GTGTATTTTCCGTATCATCTCAAGT
LOC_Os07g22700
Os.17328.1.S1_at--1060--411Chr07:12782292..12782316 (25 bp)
ATCATCTCAAGTTTGGCTGACCACA
LOC_Os07g22700
Os.17328.1.S1_at--573--10871Chr07:12782280..12782304 (25 bp)
TTGGCTGACCACAACTGCAAATTTG
LOC_Os07g22700
Target Sequence 
CCCGCTGATGTATCTAATGTCTACTATGTTTTTTTTTTTGTGAAGTCAGCTGTTCTTNTTGCATGTTGGCTGAAAAAGAT
TGTATAAGTTTTGTAACAACATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTATCC
AAGAGATTATTTAGAGGAGGAAAGCAGCCACCNTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGATGG
TTGAAAGCATGTTCTGTGGTTTCATTTTTTTTTGTCCCTACTTGGAAAAGAATGCACCGGAGTCTTGGGAGCATTTTCTA
TCCAAGAGATTATTTAGAGGAGGAAAGCATCCACCTGGTGCGAACATTATGACTACAAGTTGGTAACAGAGTAACCTGAT
GGTTGAAAGCATGTTCTGTGGTTTCAGTGTTGAGGTTGAAAATTATCTTAATGTTTTGGCTTTTGACAGTGGCATTTTGT
TTGTTTGCCTTCATTAACATTCACTTCGTATTTCGTACAGTGTATTTTCCGTATCATCTCAAGTTTGGCTGACCACAACT
GCAAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis