Browse Element(s) Details


Os.17328.2.S1_x_at

Description gb:NM_187794.1
DB_XREF= gi:34902673
GEN=P0492E07.24
TID=Os.17328.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mitochondrial inner membrane translocating protein-like (P0492E07.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) mitochondrial inner membrane translocating protein-like (P0492E07.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2270010/11mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22640Os.16249.2.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_a_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.1.S1_s_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22640Os.16249.2.S1_x_at11/117+12745901..12758982calcium-dependent lipid-binding protein, putative, expressed
LOC_Os07g22650Os.50124.1.S1_at11/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22650Os.48012.1.S1_x_at8/117+12762046..12765019xylulose kinase like protein, putative, expressed
LOC_Os07g22660OsAffx.28541.2.S1_s_at11/117+12767439..12769147hypothetical protein
LOC_Os07g22670Os.31679.1.S1_at11/117+12770549..12772592mTERF family protein, expressed
LOC_Os07g22680Os.32997.1.S1_at11/117+12775367..12776343Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g22690OsAffx.28542.1.S1_at11/117+12779809..12780135hypothetical protein
LOC_Os07g22700Os.17328.1.S1_at11/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.17328.2.S1_x_at10/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22700Os.52782.1.S1_at1/117+12782277..12788679mitochondrial import inner membrane translocase subunit TIM44, putative, expressed
LOC_Os07g22710Os.37974.1.S1_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22710Os.2714.1.S1_s_at11/117+12793282..12801868CDPK-related protein kinase, putative, expressed
LOC_Os07g22720Os.10904.1.S1_at11/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed
LOC_Os07g22720Os.14834.1.S1_at1/117+12810016..12817702pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006626biological_processprotein targeting to mitochondrion
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005744cellular_componentmitochondrial inner membrane presequence translocase complex
GO:0015462molecular_functionprotein-transporting ATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17328.2.S1_x_at--285--3491Chr07:12785646..12785670 (25 bp)
CAGGCATGCTTCTGCTGGAACAGTT
LOC_Os07g22700
Os.17328.2.S1_x_at--272--5971Chr07:12785273..12785297 (25 bp)
GAGACAAGTGACAATCCAGTGGTTC
LOC_Os07g22700
Os.17328.2.S1_x_at--710--5551Chr07:12784844..12784868 (25 bp)
GAAACCGCAACTGCAGTGTCTTTCA
LOC_Os07g22700
Os.17328.2.S1_x_at--880--1351Chr07:12784721..12784829 (25 bp)
AGAGACTCCTTTTCTTTGCCTGATT
LOC_Os07g22700
Os.17328.2.S1_x_at--33--10711Chr07:12784706..12784730 (25 bp)
TTGCCTGATTTTGCTGGTGATGTTC
LOC_Os07g22700
Os.17328.2.S1_x_at--91--2631Chr07:12784669..12784693 (25 bp)
AACCTGTTCTTACTGCATATTCCAA
LOC_Os07g22700
Os.17328.2.S1_x_at--69--7671Chr07:12784024..12784048 (25 bp)
GGGATCTACGCCCATCATTATTGTA
LOC_Os07g22700
Os.17328.2.S1_x_at--342--6492Chr07:12783913..12784026 (25 bp)
GTAGGGTTCCAAACACAGCAAATTT
LOC_Os07g22700
Os.17328.2.S1_x_at--1102--911NONE
AGGAGGGCAGGACACCATCCAAACC
NONE
Os.17328.2.S1_x_at--69--3291Chr07:12783214..12783238 (25 bp)
CAAACCGTCTTTTATGCATGGGCCA
LOC_Os07g22700
Os.17328.2.S1_x_at--118--5351Chr07:12783157..12783181 (25 bp)
GAAGAGTCATATTACCCGGTTTGGC
LOC_Os07g22700
Target Sequence 
CAGGCATGCTTCTGCTGGAACAGTTGAAAAGAGTACTCGAACTGAGTTAGTTATTGTACCAACAAAGAAATCAGTACTGG
GTGAAAAGTGGGAAGCATTTAAGAATAAGGTAGCTGAGGATGTACGAGAGCGGTGGGAGACAAGTGACAATCCAGTGGTT
CAGAAAATTCAATTGAATGAATCTATTTTTGAGGAAACCGCAACTGCAGTGTCTTTCAGGGAAATTCGGCAGAGAGACTC
CTTTTCTTTGCCTGATTTTGCTGGTGATGTTCAAGAAATGATTAAACCTGTTCTTACTGCATATTCCAAGATTTTGCATA
TTTCAGATGCTGATGTAAGAGAAACAAAAATGATGGGATCTACGCCCATCATTATTGTAGGGTTCCAAACACAGCAAATT
TACTGTGTTCGTGATAGGGAAGGACAAGTAACAGAAGGAGGGCAGGACACCATCCAAACCGTCTTTTATGCATGGGCCAT
GCAACTGATGGATAGTGATGAGGTGCCAGAGGAAGAGTCATATTACCCGGTTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17328.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis