Browse Element(s) Details


Os.17964.1.S1_at

Description gb:AK073564.1
DB_XREF= gi:32983587
TID=Os.17964.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_H05.20 (OJ1316_H05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043C02, full insert sequence.
FL= gb:AK073564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4606011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17964.1.S1_at--564--371Chr01:26516363..26516387 (25 bp)
ATCAACCTTCAAGTCAGCACTTCAA
LOC_Os01g46060
Os.17964.1.S1_at--747--1491Chr01:26516378..26516402 (25 bp)
AGCACTTCAACTTTCAACTACCCTA
LOC_Os01g46060
Os.17964.1.S1_at--354--2531Chr01:26516393..26516417 (25 bp)
AACTACCCTAGACTATCTTTTCAGC
LOC_Os01g46060
Os.17964.1.S1_at--3--691Chr01:26516654..26516678 (25 bp)
ATGACCGACTGATTTACTTGCGCTC
LOC_Os01g46060
Os.17964.1.S1_at--112--10491Chr01:26516667..26516691 (25 bp)
TTACTTGCGCTCTTCTTTAATTTAG
LOC_Os01g46060
Os.17964.1.S1_at--269--6451Chr01:26516697..26516721 (25 bp)
GATCAGCCTGACAAGGTAGGAGCTC
LOC_Os01g46060
Os.17964.1.S1_at--560--6931Chr01:26516712..26516736 (25 bp)
GTAGGAGCTCGCGAAGTTGGACAAA
LOC_Os01g46060
Os.17964.1.S1_at--178--8151Chr01:26516730..26516754 (25 bp)
GGACAAATCATGGTTGCTCCTGTTG
LOC_Os01g46060
Os.17964.1.S1_at--681--9271Chr01:26516747..26516771 (25 bp)
TCCTGTTGTAGTGCTGTGCCTGGAA
LOC_Os01g46060
Os.17964.1.S1_at--649--7851Chr01:26516792..26516816 (25 bp)
GGTAGAAGCTCCGATTCGCTCCCAA
LOC_Os01g46060
Os.17964.1.S1_at--662--10631Chr01:26516806..26516830 (25 bp)
TTCGCTCCCAATATGATTGCCTTAG
LOC_Os01g46060
Target Sequence 
ATCAACCTTCAAGTCAGCACTTCAACTTTCAACTACCCTAGACTATCTTTTCAGCGGGGTTTCTGACGGTGAAACTGATG
AGGAGGACGCTGTTCCACCGATAATATACGAGGACAAGGACACAGACGATGAANGAANTCTGAAGTTGATGCTATGGNAA
ACTGACGAGGGNGAGCCAAGAGCTGGGAGACGTTACTGATGCCTCTGANGCATTCAGATGGGAGTGATATCATGACCGAC
TGATTTACTTGCGCTCTTCTTTAATTTAGTTCATGATCAGCCTGACAAGGTAGGAGCTCGCGAAGTTGGACAAATCATGG
TTGCTCCTGTTGTAGTGCTGTGCCTGGAANTAGTTGTTGCTCTTCACTTNGGTAGAAGCTCCGATTCGCTCCCAATATGA
TTGCCTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis